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IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033185
Arc-VirIMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033185
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-89
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13353.12 best | Fer4_12 | 98.7 | 5.20e-28 | 87.6% | 54.7% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3c8fA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.84 | 79.0 | 5.57e-01 | 100.0% | 36.7% |
| 2qgqA01 | 3.80.30.20 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain | 0.63 | 45.0 | 3.41e-01 | 91.0% | 31.1% |
| 4e0aA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 50.0 | 4.16e-01 | 97.8% | 80.1% |
| 1j24A00 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 42.0 | 3.76e-01 | 93.3% | 54.9% |
| 5w4zA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.54 | 45.0 | 2.94e-01 | 94.4% | 36.8% |
| 5nthA01 | 3.40.50.10590 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Zn-dependent exopeptidases | 0.53 | 42.0 | 3.32e-01 | 86.5% | 60.4% |
| 3rnlA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 41.0 | 3.06e-01 | 88.8% | 35.6% |
| 2p0oA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 42.0 | 3.13e-01 | 91.0% | 50.4% |
| 5xgbA03 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.50 | 44.0 | 3.24e-01 | 98.9% | 35.7% |
| 7dz9A01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.50 | 43.0 | 3.12e-01 | 95.5% | 46.9% |
| 3bc9A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 43.0 | 3.03e-01 | 96.6% | 30.6% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4953078 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.91 | 82.0 | 5.83e-01 | 100.0% | 36.5% |
| 5026547 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.90 | 82.0 | 5.74e-01 | 97.8% | 34.1% |
| 5047699 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.90 | 81.0 | 5.79e-01 | 100.0% | 36.5% |
| 3165412 | 2002.1.1.232 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 | 0.90 | 84.0 | 5.83e-01 | 100.0% | 34.5% |
| 4679851 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.89 | 85.0 | 5.84e-01 | 100.0% | 38.8% |
| 3590188 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.89 | 85.0 | 5.77e-01 | 100.0% | 34.8% |
| 5049746 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.89 | 80.0 | 5.65e-01 | 100.0% | 34.7% |
| 5077514 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.89 | 82.0 | 6.03e-01 | 100.0% | 41.4% |
| 3987076 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 82.0 | 5.75e-01 | 97.8% | 39.2% |
| 4970554 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 76.0 | 5.52e-01 | 96.6% | 36.8% |
| 5048704 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 81.0 | 5.54e-01 | 100.0% | 32.5% |
| 4491492 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 80.0 | 5.67e-01 | 96.6% | 37.1% |
| 4078999 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 81.0 | 5.69e-01 | 97.8% | 36.3% |
| 5024105 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 83.0 | 5.99e-01 | 100.0% | 40.6% |
| 4961009 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 82.0 | 5.72e-01 | 100.0% | 35.2% |
| 5071385 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.88 | 80.0 | 5.56e-01 | 100.0% | 32.8% |
| 4980143 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 80.0 | 5.77e-01 | 100.0% | 37.8% |
| 4010594 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 83.0 | 5.79e-01 | 100.0% | 39.2% |
| 4541617 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 82.0 | 5.72e-01 | 100.0% | 36.0% |
| 5068571 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.87 | 80.0 | 5.70e-01 | 100.0% | 37.0% |
| 4929229 | 2002.1.1.232 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 | 0.87 | 81.0 | 5.79e-01 | 98.9% | 38.7% |
| 3972368 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.86 | 78.0 | 5.61e-01 | 98.9% | 37.8% |
| 4932624 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 78.0 | 5.48e-01 | 98.9% | 35.1% |
| 4193998 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 80.0 | 5.65e-01 | 100.0% | 36.3% |
| 5055301 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 79.0 | 5.63e-01 | 100.0% | 37.4% |
| 4279469 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 77.0 | 5.65e-01 | 100.0% | 40.9% |
| 4303997 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 78.0 | 5.60e-01 | 100.0% | 37.8% |
| 4554434 | 2002.1.1.232 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 | 0.85 | 79.0 | 5.68e-01 | 100.0% | 39.1% |
| 4549416 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.85 | 76.0 | 5.65e-01 | 100.0% | 41.7% |
| 4984856 | 2002.1.1.232 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fer4_12 | 0.84 | 79.0 | 5.55e-01 | 100.0% | 43.5% |
| 350807 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.84 | 79.0 | 5.57e-01 | 100.0% | 36.7% |
| 4277885 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.83 | 74.0 | 5.40e-01 | 100.0% | 38.8% |
| None | — | 0.83 | 78.0 | 5.71e-01 | 100.0% | 42.4% | |
| 5035306 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.82 | 75.0 | 5.35e-01 | 100.0% | 36.6% |
| 4995757 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.81 | 74.0 | 5.35e-01 | 100.0% | 38.8% |
| 4970204 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.80 | 74.0 | 5.36e-01 | 100.0% | 40.0% |
| 4599886 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.77 | 71.0 | 5.23e-01 | 100.0% | 40.9% |
| 5057772 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.65 | 50.0 | 3.68e-01 | 84.3% | 29.4% |
| 4454605 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.64 | 49.0 | 3.39e-01 | 83.1% | 24.1% |
| 4517601 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 55.0 | 3.79e-01 | 96.6% | 30.0% |
| 4085723 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.63 | 55.0 | 3.79e-01 | 96.6% | 30.0% |
| 4677964 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 51.0 | 3.72e-01 | 100.0% | 35.7% |
D2
medium
residues 90-170
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13353.12 best | Fer4_12 | 48.9 | 1.20e-12 | 85.2% | 43.1% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7xnzA02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.64 | 39.0 | 3.34e-01 | 88.9% | 37.2% |
| 4rhiA00 | 3.40.800.10 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Ureohydrolase domain | 0.60 | 44.0 | 2.95e-01 | 76.5% | 37.7% |
| 4kt7A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.59 | 49.0 | 3.59e-01 | 92.6% | 76.2% |
| 4yztA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 36.0 | 2.49e-01 | 76.5% | 97.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3791564 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.60 | 39.0 | 3.30e-01 | 74.1% | 38.6% |
| 5074452 | 2002.1.1.32 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Oxidored_FMN | 0.55 | 49.0 | 3.25e-01 | 100.0% | 25.8% |
| 5028940 | 7547.1.1.1 ↗ | a/b three-layered sandwiches › Hypothetical protein TT1679 › Hypothetical protein TT1679 › Hypothetical protein TT1679 › Antibiotic_NAT | 0.52 | 42.0 | 2.97e-01 | 91.4% | 81.7% |
| 3227954 | 7575.1.1.5 ↗ | a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C50 | 0.51 | 40.0 | 3.14e-01 | 88.9% | 52.8% |
| 3794363 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.51 | 38.0 | 3.79e-01 | 88.9% | 76.5% |
| 3799406 | 7516.1.1.16 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 | 0.50 | 41.0 | 3.00e-01 | 95.1% | 70.9% |
| 3785655 | 109.26.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains | 0.50 | 42.0 | 3.44e-01 | 100.0% | 60.0% |