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IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033204
Arc-VirIMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033204
Identity
- Kingdom:
- archaea
Quality
82.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-91
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oiwA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.73 | 39.0 | 3.37e-01 | 72.4% | 33.8% |
| 2cwzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.71 | 42.0 | 3.57e-01 | 70.1% | 37.2% |
| 2gf6A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.69 | 38.0 | 3.26e-01 | 72.4% | 33.8% |
| 2a15A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.68 | 51.0 | 4.33e-01 | 98.9% | 50.4% |
| 6hswA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.64 | 52.0 | 3.34e-01 | 88.5% | 74.6% |
| 1jkfA03 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 32.0 | 3.72e-01 | 75.9% | 66.7% |
| 1wznA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.63 | 33.0 | 3.97e-01 | 72.4% | 76.8% |
| 2bmoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 50.0 | 3.83e-01 | 96.6% | 38.1% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.62 | 45.0 | 3.91e-01 | 100.0% | 50.8% |
| 3cnxA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 43.0 | 3.72e-01 | 92.0% | 46.4% |
| 4ae8D00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.61 | 49.0 | 3.99e-01 | 88.5% | 66.7% |
| 1v2bB00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.60 | 44.0 | 3.63e-01 | 92.0% | 44.4% |
| 1of5B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.60 | 44.0 | 3.91e-01 | 98.9% | 53.1% |
| 4gb5A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.59 | 46.0 | 3.88e-01 | 96.6% | 50.0% |
| 2i4kA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 39.0 | 3.41e-01 | 92.0% | 46.1% |
| 3vskA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 44.0 | 2.94e-01 | 81.6% | 100.0% |
| 3kspA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 41.0 | 3.64e-01 | 98.9% | 50.4% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 40.0 | 3.50e-01 | 100.0% | 47.2% |
| 5ig0A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.56 | 41.0 | 3.64e-01 | 92.0% | 51.9% |
| 4jhmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 41.0 | 3.73e-01 | 79.3% | 100.0% |
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 42.0 | 3.80e-01 | 80.5% | 77.4% |
| 1lshB00 | 2.20.90.10 | Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex; beta-sheet shell regions › Vitellinogen, beta-sheet shell domain | 0.55 | 39.0 | 3.18e-01 | 98.9% | 37.9% |
| 2qwzA01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 42.0 | 3.67e-01 | 83.9% | 75.9% |
| 3nvnA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 45.0 | 2.90e-01 | 89.7% | 44.6% |
| 3f7sA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 42.0 | 3.61e-01 | 98.9% | 52.1% |
| 3cm1A00 | 2.30.31.20 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB | 0.54 | 45.0 | 3.92e-01 | 93.1% | 94.1% |
| 3dkzA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 41.0 | 3.64e-01 | 81.6% | 74.4% |
| 3of6E00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.41e-01 | 80.5% | 57.7% |
| 3ff0A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 41.0 | 3.57e-01 | 98.9% | 52.5% |
| 1q42A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 46.0 | 3.76e-01 | 97.7% | 52.2% |
| 2vqeE01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 36.0 | 4.10e-01 | 97.7% | 98.4% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 42.0 | 2.97e-01 | 92.0% | 74.4% |
| 1ixlA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 41.0 | 3.63e-01 | 86.2% | 73.6% |
| 3f1tB00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 42.0 | 3.62e-01 | 87.4% | 82.4% |
| 1f49A05 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.52 | 42.0 | 2.96e-01 | 90.8% | 85.5% |
| 2rfrA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 40.0 | 3.34e-01 | 83.9% | 49.4% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.51 | 40.0 | 3.38e-01 | 95.4% | 50.0% |
| 3ga2A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.51 | 42.0 | 3.11e-01 | 90.8% | 95.8% |
| 2dslA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.50 | 39.0 | 3.54e-01 | 82.8% | 73.0% |
| 3jvgA01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.50 | 43.0 | 3.53e-01 | 100.0% | 90.2% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3960523 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.71 | 52.0 | 4.88e-01 | 97.7% | 62.9% |
| 3244404 | 243.1.1.28 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 | 0.65 | 43.0 | 3.82e-01 | 96.6% | 48.0% |
| 3960172 | 243.1.1.18 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 | 0.64 | 47.0 | 4.25e-01 | 96.6% | 56.8% |
| 5077936 | 7579.1.1.27 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 | 0.64 | 54.0 | 3.71e-01 | 93.1% | 85.2% |
| 3474450 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.63 | 42.0 | 3.70e-01 | 95.4% | 46.4% |
| 3415714 | 79.1.1.23 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Chitin_bind_4 | 0.63 | 39.0 | 4.13e-01 | 96.6% | 70.7% |
| 3811744 | 243.1.1.49 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF2358 | 0.63 | 46.0 | 3.89e-01 | 94.3% | 47.1% |
| 3470047 | 243.1.1.2 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 | 0.62 | 42.0 | 4.30e-01 | 100.0% | 70.6% |
| 4024130 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.62 | 44.0 | 3.60e-01 | 100.0% | 39.4% |
| 3282165 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.62 | 48.0 | 4.07e-01 | 97.7% | 49.7% |
| 3400513 | 77.1.1.4 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4 | 0.62 | 39.0 | 4.12e-01 | 97.7% | 70.5% |
| 4950139 | 243.1.1.25 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 | 0.62 | 43.0 | 3.85e-01 | 93.1% | 51.2% |
| 5029448 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.61 | 54.0 | 4.46e-01 | 100.0% | 60.6% |
| 5054019 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 33.0 | 3.67e-01 | 72.4% | 64.3% |
| 3408388 | 4.1.1.326 ↗ | beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 | 0.61 | 39.0 | 4.09e-01 | 98.9% | 70.0% |
| 1562283 | 243.1.1.11 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LEH | 0.61 | 44.0 | 3.89e-01 | 96.6% | 51.9% |
| 4011330 | 243.1.1.0 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like | 0.60 | 42.0 | 3.67e-01 | 100.0% | 46.7% |
| 3507890 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.59 | 52.0 | 4.10e-01 | 100.0% | 66.8% |
| 3285746 | 243.1.1.26 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 | 0.55 | 43.0 | 3.55e-01 | 98.9% | 46.5% |
| 4059480 | 881.1.1.37 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PF27270 | 0.55 | 39.0 | 3.18e-01 | 90.8% | 37.1% |
| 3966293 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 40.0 | 4.25e-01 | 100.0% | 88.0% |
| 4942348 | 504.1.1.0 ↗ | a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB | 0.55 | 40.0 | 3.59e-01 | 77.0% | 97.6% |
| 4087100 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.55 | 42.0 | 4.35e-01 | 98.9% | 87.5% |
| 3706756 | 5084.5.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin | 0.54 | 43.0 | 3.06e-01 | 100.0% | 27.3% |
| 5030556 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.54 | 39.0 | 4.01e-01 | 100.0% | 77.6% |
| 3212332 | 243.1.1.85 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 | 0.54 | 42.0 | 3.66e-01 | 100.0% | 55.4% |
| 4025547 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.54 | 39.0 | 4.22e-01 | 98.9% | 90.7% |
| 3297534 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.53 | 40.0 | 3.23e-01 | 100.0% | 41.8% |
| 3742742 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.53 | 40.0 | 3.69e-01 | 100.0% | 60.9% |
| 3903091 | 277.1.1.0 ↗ | a+b two layers › PX domain › PX domain › PX domain | 0.53 | 38.0 | 2.48e-01 | 74.7% | 71.5% |
| 430591 | 222.1.1.3 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › Acyl_CoA_thio | 0.53 | 43.0 | 3.59e-01 | 89.7% | 68.8% |
| 4433752 | 5.1.3.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase | 0.53 | 43.0 | 3.02e-01 | 88.5% | 37.8% |
| 3550747 | 11.1.1.189 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PTCRA | 0.52 | 35.0 | 3.38e-01 | 80.5% | 58.1% |
| 4282507 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.52 | 40.0 | 3.58e-01 | 100.0% | 59.2% |
| 3768115 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.52 | 36.0 | 3.21e-01 | 98.9% | 49.2% |
| 4886524 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.52 | 36.0 | 4.11e-01 | 98.9% | 98.5% |
| 5046429 | 7579.1.1.27 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › AXE1 | 0.52 | 45.0 | 3.11e-01 | 96.6% | 32.0% |
| 3559952 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.52 | 42.0 | 3.10e-01 | 90.8% | 44.2% |
| 3595183 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 38.0 | 4.03e-01 | 97.7% | 89.3% |
| 4962347 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.51 | 40.0 | 3.53e-01 | 83.9% | 70.0% |
| 4347716 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.51 | 36.0 | 3.56e-01 | 98.9% | 67.4% |
| 3336892 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.51 | 36.0 | 3.23e-01 | 98.9% | 51.2% |
| 3298321 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.51 | 36.0 | 3.24e-01 | 98.9% | 51.6% |
| 5009416 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.51 | 39.0 | 3.48e-01 | 82.8% | 67.2% |
| 4016319 | 330.1.1.2 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 | 0.50 | 36.0 | 3.48e-01 | 100.0% | 66.0% |
| 3892200 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.50 | 38.0 | 2.81e-01 | 100.0% | 30.2% |
| 4887510 | 3274.1.1.1 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › Ribosomal_S5 | 0.50 | 34.0 | 3.53e-01 | 96.6% | 72.6% |