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IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033227
Arc-VirIMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033227
Identity
- Kingdom:
- archaea
Quality
67.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-66
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4edgA03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.72 | 48.0 | 4.96e-01 | 84.1% | 73.3% |
| 2mgqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 47.0 | 4.67e-01 | 100.0% | 75.0% |
| 4dccA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 52.0 | 5.02e-01 | 98.4% | 82.4% |
| 1x42A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.63 | 51.0 | 4.72e-01 | 92.1% | 89.2% |
| 3ungC04 | 1.20.120.1260 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle | 0.63 | 48.0 | 4.25e-01 | 85.7% | 93.8% |
| 2wusS00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 49.0 | 4.56e-01 | 87.3% | 80.5% |
| 1sr2A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.62 | 51.0 | 4.33e-01 | 98.4% | 75.0% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 44.0 | 4.39e-01 | 100.0% | 75.4% |
| 2hoqA02 | 1.10.150.520 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.61 | 49.0 | 4.60e-01 | 100.0% | 73.4% |
| 3qwwA03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.61 | 52.0 | 3.72e-01 | 96.8% | 55.5% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.61 | 51.0 | 4.49e-01 | 100.0% | 65.7% |
| 1irxA05 | 1.10.10.350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.60 | 51.0 | 4.55e-01 | 98.4% | 83.9% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.60 | 41.0 | 4.13e-01 | 73.0% | 93.8% |
| 6i2mB02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.59 | 48.0 | 3.95e-01 | 92.1% | 90.2% |
| 6nmnA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 46.0 | 3.80e-01 | 88.9% | 75.8% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.59 | 49.0 | 4.64e-01 | 98.4% | 94.8% |
| 7shlA02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.58 | 47.0 | 3.93e-01 | 95.2% | 58.2% |
| 4bj1A01 | 1.20.120.1650 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.58 | 49.0 | 4.10e-01 | 95.2% | 98.2% |
| 1mhyG02 | 1.20.1280.30 | Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 | 0.57 | 48.0 | 4.57e-01 | 93.7% | 84.9% |
| 3tjmA02 | 1.10.1470.20 | Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 | 0.57 | 44.0 | 4.09e-01 | 98.4% | 64.4% |
| 1zoyD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.57 | 41.0 | 3.60e-01 | 79.4% | 83.3% |
| 3l9tA01 | 1.10.1240.70 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.57 | 39.0 | 3.59e-01 | 84.1% | 54.2% |
| 5l0wB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 43.0 | 3.44e-01 | 87.3% | 63.8% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.56 | 45.0 | 3.73e-01 | 93.7% | 71.8% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.55 | 37.0 | 3.30e-01 | 71.4% | 48.0% |
| 1urjA03 | 1.10.150.560 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 38.0 | 3.55e-01 | 74.6% | 58.5% |
| 1cpqA00 | 1.20.120.10 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c/b562 | 0.53 | 43.0 | 3.49e-01 | 92.1% | 88.4% |
| 6ok0B01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 37.0 | 3.00e-01 | 93.7% | 38.7% |
| 1zbuB01 | 1.10.720.30 | Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain | 0.53 | 41.0 | 3.94e-01 | 87.3% | 82.4% |
| 6orcB00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.51 | 37.0 | 2.90e-01 | 76.2% | 56.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3781360 | 627.1.1.1 ↗ | alpha complex topology › VPS9 domain › VPS9 domain › VPS9 domain › VPS9 | 0.76 | 67.0 | 4.87e-01 | 100.0% | 43.4% |
| 4507511 | 2006.1.3.6 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 | 0.73 | 53.0 | 3.83e-01 | 92.1% | 26.3% |
| 3960471 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.73 | 64.0 | 6.11e-01 | 100.0% | 89.0% |
| 4251816 | 4973.1.1.1 ↗ | alpha bundles › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › helical domain in DNA primase DnaG catalytic core › DnaB_bind | 0.72 | 50.0 | 5.01e-01 | 87.3% | 72.3% |
| 3714843 | 592.6.1.0 ↗ | alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain | 0.71 | 63.0 | 5.40e-01 | 100.0% | 68.0% |
| 5008115 | 101.1.1.542 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF790 | 0.71 | 48.0 | 5.47e-01 | 93.7% | 100.0% |
| 3793451 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.68 | 49.0 | 3.54e-01 | 76.2% | 66.9% |
| 3999776 | 610.3.1.0 ↗ | alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain | 0.66 | 55.0 | 4.53e-01 | 98.4% | 48.8% |
| 4947817 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.65 | 56.0 | 3.86e-01 | 100.0% | 44.3% |
| 3938667 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 54.0 | 4.91e-01 | 96.8% | 78.9% |
| 4991597 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.65 | 55.0 | 3.82e-01 | 100.0% | 29.1% |
| 3417238 | 109.4.1.152 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPN7 | 0.64 | 51.0 | 3.21e-01 | 88.9% | 24.7% |
| 4185536 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.64 | 55.0 | 3.27e-01 | 100.0% | 15.3% |
| 3503474 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.64 | 53.0 | 3.69e-01 | 96.8% | 33.2% |
| 4395930 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.64 | 55.0 | 3.73e-01 | 100.0% | 31.6% |
| 3717244 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 46.0 | 4.51e-01 | 96.8% | 71.4% |
| 4030179 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.63 | 51.0 | 4.37e-01 | 92.1% | 89.5% |
| 3717637 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 52.0 | 4.58e-01 | 100.0% | 72.0% |
| 3720948 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 51.0 | 4.79e-01 | 100.0% | 77.2% |
| 3269226 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 48.0 | 4.64e-01 | 100.0% | 78.7% |
| 3430097 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.60 | 49.0 | 3.43e-01 | 100.0% | 45.1% |
| 3824504 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.59 | 49.0 | 3.43e-01 | 100.0% | 31.4% |
| 2882127 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.59 | 45.0 | 4.43e-01 | 93.7% | 77.8% |
| 5064133 | 101.8.1.0 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases | 0.59 | 51.0 | 3.75e-01 | 100.0% | 39.9% |
| 3663289 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.58 | 45.0 | 3.29e-01 | 88.9% | 74.2% |
| 5052898 | 2004.5.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain | 0.58 | 49.0 | 3.64e-01 | 100.0% | 45.6% |
| 3628287 | 2003.1.9.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF | 0.57 | 48.0 | 3.02e-01 | 96.8% | 16.7% |
| 4942331 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.56 | 48.0 | 3.28e-01 | 100.0% | 30.6% |
| 2814210 | 109.4.1.1427 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_8, TPR_19 | 0.54 | 39.0 | 3.69e-01 | 76.2% | 90.8% |
| 3512400 | 3274.1.1.0 ↗ | extended segments › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) › N-terminal region in 40S ribosomal protein rpS2 (S5p) | 0.52 | 39.0 | 2.69e-01 | 84.1% | 35.0% |
| 4799140 | 109.4.1.109 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sel1 | 0.51 | 35.0 | 3.53e-01 | 71.4% | 70.8% |
| 3741609 | 109.58.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C | 0.51 | 39.0 | 3.53e-01 | 88.9% | 58.9% |