Back to structures

IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033300

Arc-Vir

IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033300

Quality

70.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-81
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.69 39.0 4.25e-01 100.0% 66.7%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 33.0 3.76e-01 96.2% 63.2%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.63 38.0 3.92e-01 100.0% 63.5%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 36.0 4.31e-01 73.1% 95.6%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 36.0 3.99e-01 78.2% 73.8%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.61 44.0 4.00e-01 100.0% 57.3%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 54.0 3.72e-01 100.0% 37.6%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.59 44.0 3.23e-01 87.2% 28.3%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 53.0 3.71e-01 100.0% 34.7%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 51.0 4.39e-01 100.0% 61.3%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 53.0 4.45e-01 100.0% 60.9%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 39.0 3.41e-01 79.5% 47.4%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 33.0 3.21e-01 78.2% 50.5%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 4.48e-01 100.0% 84.1%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 49.0 4.31e-01 100.0% 64.2%
5i4dA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 44.0 4.50e-01 100.0% 90.8%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 37.0 3.62e-01 92.3% 62.1%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 49.0 3.66e-01 100.0% 43.2%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 48.0 3.38e-01 100.0% 33.1%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 4.30e-01 96.2% 79.8%
1vraA00 3.60.70.12 Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase 0.55 42.0 3.18e-01 83.3% 86.9%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 41.0 4.23e-01 96.2% 87.7%
4l5tB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 44.0 4.26e-01 100.0% 79.1%
1eovA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 46.0 3.90e-01 96.2% 64.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.54 30.0 3.18e-01 98.7% 59.7%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.53 47.0 3.76e-01 98.7% 57.5%
3i7fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 46.0 3.93e-01 98.7% 64.8%
4up7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.64e-01 96.2% 52.0%
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 48.0 3.97e-01 100.0% 68.4%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 2.68e-01 88.5% 98.6%
2eqsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 46.0 4.41e-01 98.7% 86.5%
4yi7A02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.52 43.0 3.12e-01 96.2% 45.8%
6nrzA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 44.0 3.58e-01 96.2% 55.5%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 45.0 3.77e-01 97.4% 77.9%
4jpqA00 2.60.40.1190 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 45.0 3.21e-01 93.6% 55.3%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.52 44.0 3.87e-01 100.0% 65.9%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 40.0 3.34e-01 83.3% 52.6%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 44.0 3.96e-01 100.0% 70.8%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 43.0 3.38e-01 100.0% 43.0%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 46.0 3.83e-01 100.0% 67.4%
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.51 36.0 3.86e-01 97.4% 89.2%
7bsbI01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 44.0 3.78e-01 98.7% 89.0%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.89e-01 97.4% 28.2%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.51 45.0 3.70e-01 100.0% 89.4%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.50 43.0 2.91e-01 100.0% 31.0%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3509387 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.78 41.0 3.51e-01 100.0% 34.2%
3925738 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.76 40.0 3.53e-01 78.2% 37.3%
3479661 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 38.0 3.39e-01 78.2% 37.3%
3514660 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 38.0 3.65e-01 78.2% 45.6%
3633647 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.70 41.0 4.48e-01 98.7% 70.8%
5028240 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 38.0 3.17e-01 98.7% 33.8%
5014879 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 42.0 3.72e-01 98.7% 44.3%
4941490 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.66 43.0 3.55e-01 97.4% 38.5%
3510681 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 41.0 4.24e-01 97.4% 69.3%
3721374 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 40.0 3.70e-01 93.6% 53.0%
5000468 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.61 55.0 4.68e-01 100.0% 74.4%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.61 55.0 4.55e-01 100.0% 71.1%
3023132 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.60 41.0 4.46e-01 98.7% 91.7%
3015240 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.59 54.0 4.59e-01 100.0% 63.1%
5017215 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 39.0 4.34e-01 94.9% 96.4%
5043255 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 44.0 4.39e-01 96.2% 78.8%
3598260 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.58 51.0 4.45e-01 100.0% 76.8%
5043507 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.58 52.0 4.53e-01 100.0% 77.5%
1013950 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.58 52.0 4.50e-01 100.0% 63.9%
4146527 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.57 51.0 4.33e-01 100.0% 63.1%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.57 52.0 4.14e-01 100.0% 59.7%
3387600 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.57 50.0 4.35e-01 100.0% 63.3%
4232371 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.57 50.0 4.40e-01 100.0% 75.0%
3803352 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.57 50.0 3.72e-01 97.4% 99.0%
1214550 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.57 31.0 3.14e-01 82.1% 52.6%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.56 50.0 4.28e-01 100.0% 74.4%
3648910 331.4.1.2 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.56 32.0 3.06e-01 83.3% 47.8%
3823805 76.1.1.0 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I 0.56 46.0 4.10e-01 100.0% 63.6%
5058096 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 44.0 4.32e-01 94.9% 80.0%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.55 49.0 4.12e-01 100.0% 74.8%
3838618 2.1.1.85 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.55 42.0 3.93e-01 91.0% 65.0%
3558235 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.55 49.0 4.09e-01 100.0% 73.3%
5034088 3504.3.1.1 beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.55 49.0 3.95e-01 100.0% 59.3%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.55 49.0 4.09e-01 100.0% 74.8%
3837126 76.1.1.2 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.54 45.0 3.60e-01 91.0% 76.8%
3836507 76.1.1.2 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.54 44.0 3.48e-01 91.0% 78.2%
5025524 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 40.0 3.72e-01 89.7% 63.0%
3520221 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.54 33.0 3.08e-01 75.6% 45.7%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.53 45.0 3.82e-01 100.0% 79.0%
4943495 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 45.0 4.08e-01 96.2% 92.7%
4012764 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.53 29.0 3.31e-01 92.3% 72.7%
1871494 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.53 45.0 3.99e-01 100.0% 66.1%
3507995 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.53 44.0 3.31e-01 96.2% 41.9%
490 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 29.0 3.04e-01 96.2% 52.7%
4074775 5.1.5.143 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › TPR_Sec16 0.52 44.0 2.63e-01 100.0% 18.5%
165768 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.52 45.0 4.26e-01 98.7% 79.2%
4952666 210.1.4.0 a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase 0.52 43.0 3.19e-01 97.4% 41.7%
5014027 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 37.0 3.63e-01 78.2% 97.8%
3710725 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 46.0 2.91e-01 100.0% 31.5%
3967665 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.52 43.0 4.60e-01 100.0% 98.6%
3829911 76.1.1.2 beta duplicates or obligate multimers › beta-Prism I › beta-Prism I › beta-Prism I › Jacalin 0.52 45.0 3.66e-01 97.4% 76.0%
3782651 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.52 41.0 4.07e-01 100.0% 81.2%
3507499 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 45.0 3.84e-01 100.0% 77.0%
3251867 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.52 44.0 3.83e-01 100.0% 71.5%
4027347 2.1.1.7 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › S1 0.51 45.0 3.98e-01 100.0% 76.5%
5068438 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.51 44.0 3.79e-01 100.0% 79.2%
3718410 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.85e-01 100.0% 97.0%