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IMGVR_UViG_3300028805_004037-3300028805-Ga0247608_100343102

Arc-Vir

IMGVR_UViG_3300028805_004037-3300028805-Ga0247608_100343102

Quality

92.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-92
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h8vB00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.68 56.0 4.22e-01 89.1% 75.2%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.65 41.0 3.97e-01 84.8% 56.3%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.64 56.0 4.78e-01 100.0% 91.0%
7nn3B01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.64 55.0 3.72e-01 93.5% 75.9%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.62 55.0 4.11e-01 97.8% 46.1%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.62 55.0 4.56e-01 100.0% 75.9%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.62 50.0 4.83e-01 100.0% 77.6%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 37.0 4.30e-01 79.3% 90.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 38.0 3.95e-01 92.4% 67.9%
1tkjA00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.60 54.0 3.85e-01 100.0% 89.5%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.60 50.0 3.82e-01 92.4% 45.3%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.60 44.0 3.85e-01 96.7% 51.4%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.60 37.0 3.15e-01 95.7% 38.9%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.59 43.0 4.06e-01 76.1% 69.6%
2fokA03 3.40.91.30 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.59 49.0 4.09e-01 94.6% 86.9%
1i9zA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 51.0 3.54e-01 98.9% 73.5%
4a9cA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 52.0 3.67e-01 98.9% 82.4%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 50.0 4.90e-01 94.6% 93.1%
2imqX00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.59 49.0 3.53e-01 93.5% 84.3%
2pokA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.57 50.0 3.60e-01 100.0% 86.5%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.57 40.0 3.54e-01 73.9% 65.4%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 44.0 3.90e-01 85.9% 90.1%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.56 42.0 4.14e-01 81.5% 90.2%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 44.0 3.91e-01 87.0% 94.1%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 4.41e-01 82.6% 95.8%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 42.0 3.83e-01 81.5% 96.0%
4q05A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 47.0 3.31e-01 97.8% 82.9%
2pgeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 41.0 3.65e-01 77.2% 99.2%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.55 38.0 4.21e-01 78.3% 89.3%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.44e-01 83.7% 61.7%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 4.28e-01 98.9% 88.9%
1vgyA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.55 47.0 3.44e-01 96.7% 93.9%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.99e-01 90.2% 85.9%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 40.0 4.44e-01 80.4% 100.0%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.54 41.0 3.78e-01 79.3% 74.6%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 42.0 4.10e-01 85.9% 93.3%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 32.0 3.51e-01 70.7% 74.3%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 47.0 3.53e-01 100.0% 87.0%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.53 42.0 3.09e-01 89.1% 96.3%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 4.05e-01 85.9% 84.5%
2gpiA00 3.30.160.140 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Shew3726-like 0.52 37.0 3.75e-01 73.9% 80.2%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.55e-01 94.6% 90.5%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 37.0 4.17e-01 78.3% 100.0%
6i8wB01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 3.04e-01 93.5% 91.9%
1oo0A00 3.30.1560.10 Alpha Beta › 2-Layer Sandwich › Mago nashi protein › Mago nashi 0.51 42.0 3.61e-01 88.0% 94.4%
6l4lA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 35.0 3.15e-01 70.7% 97.8%
2r15A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.31e-01 70.7% 70.3%
2r11D00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 44.0 3.18e-01 100.0% 98.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3520584 3147.1.1.1 a+b two layers › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › DUF3013 0.79 66.0 5.97e-01 90.2% 72.0%
396482 3147.1.1.1 a+b two layers › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › Uncharacterized protein EF_1977 › DUF3013 0.78 70.0 6.08e-01 98.9% 69.3%
5032188 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.73 53.0 4.11e-01 92.4% 35.9%
4970708 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.72 42.0 3.87e-01 92.4% 46.1%
3971082 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.71 61.0 5.40e-01 95.7% 86.7%
5062226 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.70 64.0 4.90e-01 100.0% 53.5%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.69 55.0 5.89e-01 89.1% 100.0%
5045499 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.69 50.0 5.53e-01 92.4% 100.0%
3402152 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.68 57.0 5.22e-01 91.3% 100.0%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.66 43.0 5.04e-01 85.9% 100.0%
4997935 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.65 36.0 3.44e-01 89.1% 44.5%
4972328 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.64 47.0 5.03e-01 96.7% 94.7%
4999520 2008.1.1.44 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FokI_cleav_dom 0.62 53.0 4.38e-01 94.6% 74.7%
3435911 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 44.0 4.17e-01 84.8% 61.8%
3167601 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.62 47.0 4.68e-01 81.5% 100.0%
4941364 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.62 52.0 5.00e-01 100.0% 81.9%
3894031 330.1.1.6 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.61 44.0 4.54e-01 84.8% 80.0%
3589839 12.3.1.3 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Aldose_epim 0.61 46.0 3.11e-01 79.3% 99.4%
3420092 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 43.0 4.61e-01 85.9% 87.5%
4012764 243.4.1.0 a+b two layers › Cystatin-like › DsbC/DsbG N-terminal domain-like › DsbC/DsbG N-terminal domain-like 0.60 34.0 4.11e-01 75.0% 90.9%
3784810 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.59 47.0 4.67e-01 87.0% 100.0%
4015773 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 45.0 4.40e-01 83.7% 100.0%
3373320 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.59 41.0 4.62e-01 80.4% 97.1%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 45.0 4.15e-01 84.8% 94.4%
3519032 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 44.0 4.30e-01 82.6% 73.0%
5072248 3662.1.1.4 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › PAC_bac 0.58 43.0 3.83e-01 78.3% 55.8%
3515433 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 40.0 4.67e-01 84.8% 100.0%
3514659 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 39.0 3.83e-01 81.5% 64.0%
5021439 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.58 38.0 4.25e-01 78.3% 84.0%
3993443 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 40.0 4.38e-01 85.9% 89.3%
3265841 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.57 45.0 4.41e-01 87.0% 100.0%
5019887 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.57 40.0 4.38e-01 93.5% 91.8%
4979553 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.57 35.0 3.25e-01 93.5% 46.7%
4943646 2011.1.1.6 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 0.55 49.0 3.59e-01 100.0% 91.2%
3510389 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 40.0 4.09e-01 85.9% 77.5%
3587666 330.1.1.11 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DUF1071 0.55 42.0 3.70e-01 81.5% 76.3%
3797651 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 38.0 3.87e-01 81.5% 72.2%
3627771 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 39.0 4.05e-01 84.8% 80.0%
3232290 2.1.1.68 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI1_C 0.55 39.0 3.41e-01 75.0% 57.1%
4240494 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.54 41.0 2.81e-01 82.6% 31.8%
5015727 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.54 40.0 3.91e-01 78.3% 96.0%
3517153 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 42.0 4.46e-01 91.3% 97.5%
4976250 3662.1.1.0 a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related 0.53 40.0 3.72e-01 95.7% 64.3%
4026008 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 41.0 4.28e-01 92.4% 92.9%
3611654 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.53 43.0 3.28e-01 93.5% 69.4%
3606814 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.53 35.0 3.77e-01 75.0% 79.5%
3274430 12.3.1.40 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.52 44.0 3.39e-01 92.4% 81.9%
3802643 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 44.0 4.40e-01 93.5% 94.7%
4018118 12.3.1.40 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › TREH_N 0.52 44.0 3.18e-01 94.6% 79.3%
3905721 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.52 35.0 3.24e-01 70.7% 82.5%
5059065 11.1.1.1410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CarboxypepD_reg 0.51 43.0 4.52e-01 94.6% 98.8%
3951937 330.8.1.1 a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.51 38.0 3.93e-01 80.4% 84.3%
3829527 220.1.1.153 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.51 37.0 3.13e-01 77.2% 78.1%
2336349 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 38.0 3.95e-01 85.9% 83.1%