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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015139

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015139 ↗
Kingdom:: archaea

Quality

68.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-74

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5nx5B00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.63	47.0	3.03e-01	85.2%	37.3%
1k78A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	38.0	3.62e-01	92.6%	57.6%
5faaA00	2.60.40.10	Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins	0.51	41.0	3.23e-01	94.4%	69.9%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3249304	223.2.1.19 ↗	a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1	0.53	45.0	3.31e-01	96.3%	76.7%

D2 high residues 87-105_110-225

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4ftfA00	3.30.300.250	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 ›	0.67	38.0	4.16e-01	95.6%	67.9%
3ajvC02	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.63	31.0	3.73e-01	97.8%	68.1%
2zyzC00	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.61	29.0	3.37e-01	97.0%	61.5%
3ieyB00	3.40.1350.150	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.60	32.0	3.12e-01	97.0%	44.1%
3d4eA02	3.30.1450.10	Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 ›	0.60	34.0	4.30e-01	79.3%	96.2%
2ymaA00	3.10.310.60	Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 ›	0.59	40.0	4.07e-01	100.0%	68.9%
3d4eA01	3.30.1450.10	Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 ›	0.55	32.0	4.03e-01	72.6%	94.0%
1s0wC01	3.30.1450.10	Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 ›	0.54	35.0	4.16e-01	100.0%	96.7%
2b78A01	2.30.130.10	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain	0.52	27.0	3.54e-01	96.3%	98.5%
1a79A01	3.40.1350.10	Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 ›	0.51	30.0	3.38e-01	94.8%	75.0%
3vseA01	2.30.130.10	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › PUA domain	0.51	28.0	3.55e-01	83.7%	98.6%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
369229	3535.1.1.1 ↗	a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS	0.74	41.0	4.36e-01	100.0%	61.7%
3588071	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.68	40.0	3.78e-01	95.6%	48.8%
4990951	3535.1.1.0 ↗	a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373	0.64	40.0	4.06e-01	100.0%	62.2%
3937121	10.4.1.0 ↗	beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain	0.64	29.0	3.46e-01	99.3%	62.2%
5000875	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.61	31.0	3.69e-01	97.8%	71.1%
3244571	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.60	29.0	3.48e-01	95.6%	66.7%
4937663	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.59	33.0	3.76e-01	97.0%	71.2%
4240860	3421.1.1.1 ↗	a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain › Yos9_DD	0.57	40.0	4.16e-01	100.0%	75.8%
5054762	2008.2.1.1 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo	0.57	32.0	3.60e-01	97.8%	69.5%
4385298	3421.1.1.1 ↗	a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain › Yos9_DD	0.55	39.0	4.04e-01	100.0%	78.4%
4081828	3421.1.1.1 ↗	a+b complex topology › Yos9 dimerization domain › Yos9 dimerization domain › Yos9 dimerization domain › Yos9_DD	0.54	40.0	4.00e-01	100.0%	75.6%
4436952	5104.1.1.1 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1	0.54	35.0	3.61e-01	100.0%	67.9%
4672117	5104.1.1.1 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1	0.53	35.0	3.71e-01	100.0%	72.8%
3387200	7503.1.1.0 ↗	a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain	0.53	31.0	3.66e-01	85.9%	82.1%
3253922	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.52	36.0	2.91e-01	70.4%	90.5%
3998708	5104.1.1.2 ↗	a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › CDC45	0.51	42.0	4.06e-01	100.0%	78.7%
4943737	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.50	38.0	3.63e-01	91.9%	66.9%