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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015177
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015177
Identity
- Kingdom:
- archaea
Quality
78.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-58
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.79 | 59.0 | 4.46e-01 | 79.3% | 93.8% |
| 6ldkA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.75 | 66.0 | 4.72e-01 | 100.0% | 48.8% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.73 | 63.0 | 4.74e-01 | 100.0% | 70.2% |
| 3kflA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.72 | 62.0 | 4.46e-01 | 100.0% | 59.4% |
| 3rlfF01 | 1.20.58.370 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like | 0.71 | 53.0 | 4.71e-01 | 81.0% | 55.8% |
| 3dkqA02 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.70 | 50.0 | 5.44e-01 | 84.5% | 91.5% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.70 | 50.0 | 5.41e-01 | 84.5% | 91.7% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.69 | 58.0 | 4.90e-01 | 94.8% | 57.6% |
| 2x1lA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.69 | 59.0 | 4.30e-01 | 100.0% | 49.4% |
| 4h63H01 | 1.20.58.1710 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 52.0 | 4.92e-01 | 84.5% | 95.8% |
| 3besR03 | 6.10.140.1480 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 48.0 | 4.86e-01 | 74.1% | 76.8% |
| 4akgA11 | 1.20.920.20 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.68 | 54.0 | 3.44e-01 | 86.2% | 33.7% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.67 | 48.0 | 4.55e-01 | 77.6% | 64.8% |
| 1f45B00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.67 | 50.0 | 3.85e-01 | 81.0% | 55.6% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 51.0 | 4.86e-01 | 84.5% | 69.6% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.66 | 50.0 | 5.42e-01 | 81.0% | 97.9% |
| 2yqdA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.65 | 48.0 | 3.84e-01 | 81.0% | 93.3% |
| 1b3qA01 | 1.10.287.560 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Histidine kinase CheA-like, homodimeric domain | 0.65 | 51.0 | 4.98e-01 | 84.5% | 80.6% |
| 5hb0D01 | 1.20.120.1880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain | 0.64 | 53.0 | 3.56e-01 | 98.3% | 25.5% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 48.0 | 4.85e-01 | 82.8% | 91.4% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 48.0 | 4.40e-01 | 82.8% | 65.3% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.62 | 47.0 | 4.38e-01 | 93.1% | 63.3% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.62 | 46.0 | 4.62e-01 | 84.5% | 78.7% |
| 2kw6A00 | 6.10.140.1300 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 46.0 | 4.46e-01 | 81.0% | 72.3% |
| 1hlvA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 51.0 | 5.11e-01 | 96.6% | 100.0% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.61 | 50.0 | 4.62e-01 | 91.4% | 69.7% |
| 3p5jB02 | 1.10.20.120 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › | 0.61 | 48.0 | 4.21e-01 | 91.4% | 55.2% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.61 | 50.0 | 4.25e-01 | 98.3% | 86.1% |
| 1s8nA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 42.0 | 4.22e-01 | 72.4% | 74.1% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 47.0 | 4.38e-01 | 86.2% | 67.6% |
| 3fixA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 47.0 | 3.40e-01 | 87.9% | 45.5% |
| 1l5jA03 | 3.40.1060.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 | 0.59 | 43.0 | 3.08e-01 | 77.6% | 41.0% |
| 3ulqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 39.0 | 3.95e-01 | 70.7% | 70.7% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3576658 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.86 | 61.0 | 6.32e-01 | 74.1% | 78.2% |
| 3976699 | 3355.1.1.21 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › Na_sulph_symp, CitMHS | 0.78 | 65.0 | 3.79e-01 | 91.4% | 12.9% |
| 5052262 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.76 | 59.0 | 5.39e-01 | 82.8% | 74.7% |
| 3495575 | 109.4.1.91 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec10_HB | 0.75 | 64.0 | 3.88e-01 | 96.6% | 24.6% |
| 3605475 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.74 | 66.0 | 4.36e-01 | 100.0% | 29.2% |
| 5054937 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.73 | 64.0 | 4.70e-01 | 100.0% | 45.2% |
| 4186632 | 4146.1.1.3 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › PKHD_C | 0.72 | 50.0 | 5.62e-01 | 82.8% | 95.6% |
| 4553862 | 4146.1.1.0 ↗ | alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like | 0.71 | 50.0 | 5.54e-01 | 84.5% | 95.6% |
| 4565026 | 130.1.1.1 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP | 0.71 | 52.0 | 4.81e-01 | 79.3% | 82.7% |
| 4240705 | 632.7.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain | 0.69 | 54.0 | 4.73e-01 | 84.5% | 57.6% |
| 4666568 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.68 | 52.0 | 3.24e-01 | 84.5% | 18.6% |
| 4466100 | 605.1.1.322 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GlutR_dimer | 0.68 | 49.0 | 4.89e-01 | 77.6% | 96.7% |
| 5044888 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.67 | 54.0 | 4.09e-01 | 87.9% | 36.4% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.66 | 47.0 | 4.42e-01 | 84.5% | 62.0% |
| 2440870 | 109.51.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › TssA helical domains › TssA helical domains | 0.66 | 44.0 | 4.85e-01 | 77.6% | 87.0% |
| 3613914 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.65 | 51.0 | 4.69e-01 | 84.5% | 69.3% |
| 3509826 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.65 | 54.0 | 4.22e-01 | 94.8% | 80.8% |
| 2456957 | 192.13.1.1 ↗ | alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like › Isy1 | 0.64 | 49.0 | 4.98e-01 | 82.8% | 94.6% |
| 5082509 | 101.1.2.31 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha | 0.63 | 51.0 | 3.94e-01 | 89.7% | 64.6% |
| 4286656 | 140.1.1.11 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 | 0.63 | 52.0 | 4.40e-01 | 100.0% | 68.2% |
| 3989443 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.61 | 48.0 | 4.85e-01 | 96.6% | 91.4% |
| 3172138 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.61 | 49.0 | 4.73e-01 | 86.2% | 80.0% |
| 3670318 | 4030.1.1.15 ↗ | alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › Ist1 | 0.59 | 51.0 | 5.07e-01 | 100.0% | 93.3% |
| 3328714 | 101.1.21.2 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › PF29140 | 0.59 | 49.0 | 3.20e-01 | 96.6% | 53.2% |
| 5004718 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 48.0 | 3.62e-01 | 98.3% | 61.3% |