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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015178

Arc-Vir

IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015178

Identity

Kingdom:
archaea

Quality

61.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-101
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fppA03 6.10.140.1990 Special › Helix non-globular › Helix Hairpins › 0.76 59.0 4.67e-01 86.0% 44.3%
2jaeA03 1.20.1440.240 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.72 57.0 4.23e-01 86.0% 40.6%
7egfc01 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.72 59.0 4.87e-01 100.0% 50.0%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.72 57.0 4.96e-01 90.7% 66.2%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.71 57.0 4.85e-01 95.3% 57.1%
1qv9A02 6.10.140.120 Special › Helix non-globular › Helix Hairpins › 0.70 56.0 4.27e-01 90.7% 37.9%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 63.0 5.15e-01 100.0% 55.8%
2ktmA00 1.10.790.10 Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain 0.67 55.0 4.87e-01 97.7% 64.7%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.65 48.0 3.27e-01 88.4% 20.7%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 56.0 4.22e-01 100.0% 42.5%
4gf0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 55.0 4.08e-01 100.0% 49.6%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 47.0 3.45e-01 86.0% 30.0%
2fh0A00 1.10.8.140 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PDCD5, DNA-binding domain 0.62 45.0 3.83e-01 83.7% 48.1%
3qvmB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.56 45.0 2.80e-01 97.7% 24.3%
1khvA04 6.10.140.320 Special › Helix non-globular › Helix Hairpins › 0.56 42.0 4.02e-01 86.0% 90.7%
4impA01 6.10.140.1830 Special › Helix non-globular › Helix Hairpins › 0.53 39.0 3.74e-01 86.0% 81.1%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.50 37.0 3.17e-01 81.4% 97.3%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3456467 4970.1.1.0 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.87 76.0 6.06e-01 100.0% 55.3%
4488191 191.1.1.0 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.85 74.0 5.38e-01 100.0% 36.5%
3482354 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.79 70.0 4.67e-01 100.0% 27.0%
3249893 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 61.0 4.84e-01 95.3% 42.2%
3420476 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 5.41e-01 100.0% 57.3%
3327323 101.28.1.0 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins 0.75 59.0 5.29e-01 93.0% 61.5%
3340355 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.75 61.0 5.39e-01 100.0% 62.9%
3690556 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.74 60.0 5.48e-01 95.3% 71.7%
3297054 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.73 60.0 5.26e-01 93.0% 67.7%
3645744 148.1.1.0 ↗ alpha arrays › Histone-like › Histone-related › Histone 0.72 58.0 4.79e-01 100.0% 50.0%
3735563 101.1.2.267 ↗ alpha arrays › HTH › HTH › winged helix domain › Nse4_C 0.71 62.0 4.24e-01 97.7% 99.3%
4941353 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.71 65.0 4.67e-01 100.0% 40.9%
3487611 101.1.8.3 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Topoisom_I,Topo_C_assoc 0.70 58.0 4.91e-01 95.3% 54.7%
3283630 601.7.1.18 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_SAV_6107 0.70 62.0 4.58e-01 100.0% 50.9%
3440543 207.1.1.96 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_At1g61320_AtMIF1 0.70 56.0 3.23e-01 93.0% 9.5%
3168455 170.1.1.7 ↗ alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Ty3_capsid 0.69 48.0 4.06e-01 79.1% 41.2%
4941754 4070.1.1.0 ↗ alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.67 57.0 3.61e-01 100.0% 20.0%
3605352 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 53.0 4.05e-01 100.0% 38.3%
4944643 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 51.0 3.95e-01 97.7% 98.3%
3934455 216.1.1.17 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C 0.65 48.0 3.70e-01 90.7% 32.2%
5074963 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.62 53.0 4.52e-01 97.7% 58.6%