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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015215

Arc-Vir

IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015215

Quality

66.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-69
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 62.0 5.03e-01 86.5% 45.7%
2qf4A01 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.80 65.0 5.62e-01 100.0% 58.2%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 61.0 4.93e-01 86.5% 45.3%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.79 59.0 4.01e-01 84.6% 23.3%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.78 64.0 5.35e-01 100.0% 52.2%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 59.0 5.27e-01 84.6% 58.1%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.77 70.0 5.90e-01 100.0% 65.5%
3fzzA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.77 59.0 4.52e-01 84.6% 41.7%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.77 63.0 5.20e-01 100.0% 50.5%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.75 64.0 5.71e-01 100.0% 67.6%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.75 66.0 5.49e-01 100.0% 72.8%
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 55.0 4.92e-01 82.7% 58.3%
1pj5A05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.73 63.0 5.59e-01 100.0% 71.8%
3w1eA03 2.40.10.410 Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain 0.71 63.0 5.25e-01 100.0% 77.5%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.71 53.0 5.45e-01 80.8% 97.9%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 53.0 4.30e-01 86.5% 44.6%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.68 57.0 4.97e-01 100.0% 84.9%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.65 42.0 3.13e-01 86.5% 26.6%
4v15A01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.65 54.0 3.96e-01 100.0% 34.0%
4q63A00 2.40.10.430 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 56.0 4.60e-01 96.2% 60.2%
3anuA01 2.40.37.20 Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain 0.64 55.0 4.08e-01 100.0% 37.5%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.62 41.0 3.06e-01 86.5% 25.0%
7sf2A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.30e-01 100.0% 86.0%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.59 49.0 3.76e-01 100.0% 41.8%
4je0B01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 3.55e-01 100.0% 41.4%
4b60A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 47.0 3.60e-01 100.0% 41.3%
4mboA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 3.54e-01 100.0% 39.7%
1n67A01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 47.0 3.56e-01 100.0% 41.8%
4p0dA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 46.0 3.39e-01 100.0% 38.8%
3fkuS02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 3.86e-01 100.0% 83.5%
3irpX01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.40e-01 100.0% 40.1%
4mbrA01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.42e-01 100.0% 71.3%
4g7wA00 2.40.30.280 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Vibrio phage CTXphi pIII, N-terminal N1 domain 0.55 47.0 3.89e-01 100.0% 82.7%
5eo9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 44.0 3.63e-01 100.0% 57.3%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.54 44.0 3.82e-01 100.0% 69.6%
4jfhE01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.45e-01 96.2% 82.6%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.53 45.0 3.88e-01 100.0% 69.7%
5eo9A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.56e-01 100.0% 60.7%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.69e-01 100.0% 79.4%
3rpiB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.67e-01 100.0% 64.3%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.53 38.0 3.78e-01 78.8% 82.1%
5j60B02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 36.0 2.81e-01 73.1% 75.0%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.52 39.0 3.49e-01 90.4% 82.0%
1ypzF01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 42.0 3.37e-01 100.0% 61.0%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 42.0 3.15e-01 100.0% 33.8%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 37.0 2.95e-01 84.6% 56.3%
2f68X01 2.60.40.1280 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 45.0 3.32e-01 100.0% 39.9%
1egxA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 2.99e-01 82.7% 74.8%
1yqyA01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.51 37.0 2.69e-01 90.4% 58.3%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 3.12e-01 84.6% 75.7%
2kkqA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.19e-01 96.2% 64.7%
4c1uA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 38.0 2.72e-01 88.5% 34.1%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3393534 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.85 68.0 4.40e-01 86.5% 24.9%
3398231 1.1.17.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.83 66.0 4.31e-01 86.5% 26.2%
3592906 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.81 73.0 5.71e-01 100.0% 69.5%
3517355 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.80 69.0 5.81e-01 100.0% 64.4%
1147338 1.1.5.5 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pico_P2A 0.79 61.0 4.36e-01 86.5% 30.3%
3163913 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.79 71.0 4.52e-01 100.0% 54.6%
3959311 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.78 70.0 5.70e-01 100.0% 57.9%
4598968 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.78 69.0 5.19e-01 100.0% 68.8%
4341159 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.78 68.0 4.97e-01 100.0% 77.1%
4932654 284.4.1.1 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF 0.78 59.0 6.06e-01 82.7% 92.0%
4032514 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.77 70.0 4.58e-01 100.0% 66.8%
3969735 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.77 59.0 5.33e-01 82.7% 61.4%
3590667 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.77 69.0 4.47e-01 100.0% 61.6%
4037377 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.76 66.0 5.16e-01 100.0% 74.8%
4962327 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 59.0 5.86e-01 84.6% 87.3%
4962679 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.76 59.0 5.86e-01 84.6% 87.3%
2410116 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.75 66.0 5.80e-01 100.0% 87.2%
3743935 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.75 66.0 5.73e-01 100.0% 77.5%
4052198 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.75 64.0 4.85e-01 100.0% 71.5%
5021656 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.75 57.0 5.86e-01 84.6% 92.0%
2771876 1.1.16.1 beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD 0.74 64.0 5.05e-01 100.0% 48.7%
4200331 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.74 65.0 5.34e-01 100.0% 69.1%
4628885 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 63.0 4.92e-01 100.0% 69.6%
3215880 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.71 44.0 2.65e-01 86.5% 9.7%
3443644 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.70 43.0 2.59e-01 86.5% 9.7%
3938609 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.70 58.0 5.47e-01 100.0% 75.4%
3181789 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.70 43.0 2.66e-01 86.5% 10.8%
4448587 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.70 60.0 4.61e-01 100.0% 49.6%
3180365 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.70 60.0 5.10e-01 100.0% 84.4%
3719364 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.70 47.0 2.84e-01 88.5% 11.1%
4263808 1.1.8.20 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C 0.70 51.0 4.20e-01 100.0% 43.2%
4951499 284.4.1.0 a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain 0.68 52.0 4.68e-01 84.6% 90.7%
4028638 1.1.8.0 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 60.0 5.03e-01 100.0% 66.7%
4013601 601.23.1.0 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III 0.68 42.0 2.57e-01 86.5% 10.7%
4282238 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 43.0 2.39e-01 86.5% 4.4%
4140305 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.67 43.0 2.66e-01 86.5% 11.0%
4028319 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 56.0 4.26e-01 100.0% 59.3%
3256930 1.1.7.32 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › D-ser_dehydrat 0.66 58.0 4.34e-01 100.0% 49.2%
3740006 1.1.7.32 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › D-ser_dehydrat 0.66 58.0 4.22e-01 100.0% 40.7%
4199223 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.66 43.0 2.61e-01 86.5% 10.6%
4421536 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.64 45.0 2.77e-01 86.5% 12.3%
3602505 3454.1.1.0 beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.63 51.0 3.98e-01 100.0% 40.9%
3389170 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.63 48.0 4.19e-01 86.5% 64.7%
4114495 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.59 46.0 3.05e-01 88.5% 21.0%
3201503 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 44.0 3.91e-01 84.6% 96.2%
4403052 2007.1.16.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.58 43.0 3.11e-01 82.7% 29.0%
4033159 11.1.5.48 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Big_8 0.57 47.0 3.53e-01 100.0% 39.3%
3872231 391.1.2.11 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC2L_2nd 0.57 38.0 3.77e-01 71.2% 65.5%
4588391 2007.1.16.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Iron-sulphur enzyme Dph2 0.57 44.0 3.16e-01 82.7% 30.7%
3711598 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.57 46.0 3.62e-01 100.0% 80.0%
3540167 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 33.0 2.51e-01 100.0% 21.5%
4405937 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 38.0 3.40e-01 100.0% 48.2%
3538894 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.54 36.0 3.86e-01 73.1% 90.0%
3234374 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.54 44.0 3.61e-01 100.0% 60.9%
1837127 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.53 46.0 3.89e-01 100.0% 69.7%
3498911 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 42.0 3.65e-01 100.0% 89.8%
3490740 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.53 36.0 3.50e-01 75.0% 63.3%
3268832 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 42.0 3.50e-01 100.0% 85.5%
4235338 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.52 35.0 3.81e-01 73.1% 95.0%
5028450 331.1.1.6 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › DUF3378 0.51 42.0 3.90e-01 100.0% 90.0%