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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015280
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015280
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-81
Domain cluster:
rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bt3A02 | 3.30.720.110 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.82 | 35.0 | 4.06e-01 | 73.3% | 54.4% |
| 1clwA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.77 | 35.0 | 2.04e-01 | 73.3% | 5.9% |
| 3d6wB02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.68 | 35.0 | 4.56e-01 | 78.7% | 94.9% |
| 1a73A00 | 3.90.75.10 | Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A | 0.67 | 60.0 | 4.67e-01 | 100.0% | 69.8% |
| 2yf0A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 33.0 | 3.18e-01 | 80.0% | 41.4% |
| 5cbeE00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.65 | 36.0 | 3.84e-01 | 78.7% | 62.5% |
| 3zfnA02 | 2.30.140.40 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain | 0.62 | 32.0 | 3.52e-01 | 86.7% | 59.6% |
| 2ls0101 | 2.40.50.670 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Target recognition domain of lytic exoenzyme | 0.60 | 34.0 | 2.96e-01 | 80.0% | 34.2% |
| 3blzA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 32.0 | 2.72e-01 | 86.7% | 32.3% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.58 | 34.0 | 3.12e-01 | 88.0% | 42.6% |
| 2e7zA01 | 2.20.25.90 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains | 0.55 | 31.0 | 3.45e-01 | 84.0% | 70.2% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.55 | 36.0 | 3.84e-01 | 89.3% | 79.0% |
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.54 | 40.0 | 3.36e-01 | 82.7% | 89.3% |
| 1ci3M02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.53 | 35.0 | 3.91e-01 | 80.0% | 87.9% |
| 3mzkB01 | 6.20.50.30 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.52 | 27.0 | 3.18e-01 | 80.0% | 84.2% |
| 3luuA00 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.52 | 39.0 | 3.72e-01 | 81.3% | 74.2% |
| 2b4wA00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.51 | 39.0 | 2.73e-01 | 88.0% | 40.9% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3266965 | 378.1.2.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 | 0.85 | 70.0 | 7.43e-01 | 92.0% | 100.0% |
| 5053631 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.85 | 75.0 | 6.47e-01 | 93.3% | 89.1% |
| 3539740 | 378.1.1.19 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 | 0.75 | 69.0 | 5.71e-01 | 98.7% | 62.4% |
| 4303143 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.74 | 49.0 | 4.71e-01 | 82.7% | 60.0% |
| 3586841 | 378.1.1.7 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 | 0.73 | 65.0 | 5.67e-01 | 100.0% | 91.3% |
| 3605879 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.71 | 37.0 | 4.48e-01 | 84.0% | 82.2% |
| 3973145 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.70 | 32.0 | 3.68e-01 | 78.7% | 56.4% |
| 4949181 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.65 | 49.0 | 4.90e-01 | 84.0% | 78.7% |
| 3260066 | 1129.1.1.1 ↗ | a+b three layers › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › Mitochondrial complex I, B17.2 subunit › NDUFA12 | 0.62 | 34.0 | 3.09e-01 | 96.0% | 39.0% |
| 5016556 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 35.0 | 3.28e-01 | 89.3% | 46.7% |
| 3919495 | 109.4.1.20 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RYDR_ITPR | 0.57 | 44.0 | 2.39e-01 | 81.3% | 8.7% |
| 5011439 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.57 | 40.0 | 3.24e-01 | 74.7% | 39.3% |
| 4595815 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.56 | 39.0 | 4.22e-01 | 85.3% | 84.6% |
| 4129953 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.56 | 39.0 | 4.14e-01 | 84.0% | 83.1% |
| 3989851 | 11.1.1.1339 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CFSR | 0.56 | 42.0 | 3.37e-01 | 88.0% | 41.4% |
| 4456732 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 39.0 | 3.81e-01 | 86.7% | 67.5% |
| 3646092 | 719.2.1.1 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like › GBBH-like_N | 0.55 | 48.0 | 4.03e-01 | 100.0% | 91.1% |
| 3412142 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.55 | 39.0 | 3.37e-01 | 100.0% | 46.7% |
| 4189267 | 3604.1.1.0 ↗ | a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain | 0.54 | 34.0 | 3.73e-01 | 90.7% | 78.3% |
| 3955812 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.54 | 41.0 | 3.80e-01 | 94.7% | 64.5% |
| 4971094 | 802.1.1.0 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 | 0.54 | 39.0 | 3.18e-01 | 76.0% | 42.2% |
| 4625348 | 325.1.7.3 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Apocytochr_F_C | 0.54 | 36.0 | 3.96e-01 | 80.0% | 86.7% |
| 4349950 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 35.0 | 3.84e-01 | 81.3% | 85.0% |
| 4435672 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 36.0 | 3.90e-01 | 86.7% | 83.1% |
| 4119875 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 36.0 | 3.86e-01 | 86.7% | 83.1% |
| 3927236 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.52 | 41.0 | 3.46e-01 | 88.0% | 88.8% |
| 4854383 | 1001.1.1.0 ↗ | a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 | 0.51 | 30.0 | 3.23e-01 | 85.3% | 68.2% |
| 3769980 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.50 | 37.0 | 3.51e-01 | 78.7% | 78.9% |
D2
medium
residues 83-158
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4tmaJ00 | 3.30.50.10 | Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A | 0.78 | 44.0 | 5.06e-01 | 71.1% | 75.4% |
| 1mhyD00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.57 | 45.0 | 2.75e-01 | 85.5% | 22.5% |
| 4gklA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 31.0 | 3.00e-01 | 89.5% | 47.7% |
| 4p1mB01 | 3.30.160.880 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain | 0.53 | 30.0 | 3.66e-01 | 73.7% | 95.6% |
| 3rhtA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.51 | 35.0 | 2.48e-01 | 71.1% | 54.4% |
| 2zihC00 | 1.10.3630.10 | Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like | 0.51 | 36.0 | 2.60e-01 | 78.9% | 42.3% |
| 2incA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.50 | 40.0 | 2.48e-01 | 89.5% | 42.4% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3596234 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 35.0 | 4.42e-01 | 78.9% | 100.0% |
| 3784386 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.62 | 25.0 | 3.20e-01 | 90.8% | 60.0% |
| 5074442 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.60 | 33.0 | 2.74e-01 | 76.3% | 31.1% |
| 3598294 | 226.1.1.0 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain | 0.53 | 30.0 | 2.59e-01 | 81.6% | 32.8% |
| 4557537 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.52 | 36.0 | 3.45e-01 | 94.7% | 61.1% |
| 4940345 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.51 | 32.0 | 2.66e-01 | 76.3% | 36.3% |
| 3619358 | 5001.1.1.111 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1, 7TM_GPCR_Srw | 0.51 | 42.0 | 2.85e-01 | 100.0% | 89.0% |
| 4243626 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.51 | 35.0 | 2.27e-01 | 72.4% | 54.1% |