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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015289
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015289
Identity
- Kingdom:
- archaea
Quality
84.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 2-82
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nr4C00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.62 | 34.0 | 3.73e-01 | 76.5% | 65.2% |
| 1kz7C02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 47.0 | 3.89e-01 | 80.2% | 84.7% |
| 1eqtA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 31.0 | 3.40e-01 | 76.5% | 62.7% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 36.0 | 3.65e-01 | 76.5% | 66.7% |
| 2hdlA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 36.0 | 3.73e-01 | 86.4% | 74.0% |
| 2jr1A01 | 3.30.160.510 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Histone-like nucleoid-structuring protein H-NS | 0.54 | 36.0 | 4.02e-01 | 85.2% | 89.1% |
| 7wu7501 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 43.0 | 3.72e-01 | 100.0% | 59.5% |
| 3nwnA00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.51 | 42.0 | 2.78e-01 | 87.7% | 40.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3778175 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.88 | 48.0 | 2.87e-01 | 100.0% | 9.8% |
| 3606812 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.76 | 42.0 | 2.54e-01 | 92.6% | 9.6% |
| 3787279 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.70 | 51.0 | 3.47e-01 | 76.5% | 35.4% |
| 4647039 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.69 | 43.0 | 2.64e-01 | 76.5% | 11.3% |
| 665 | 1170.1.1.1 ↗ | beta barrels › IL8-related › IL8-related › IL8 › IL8 | 0.63 | 34.0 | 3.75e-01 | 77.8% | 64.2% |
| 3222747 | 245.1.1.1 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C | 0.60 | 44.0 | 4.07e-01 | 75.3% | 78.0% |
| 3971859 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.59 | 54.0 | 4.86e-01 | 100.0% | 81.8% |
| None | — | 0.59 | 44.0 | 2.73e-01 | 80.2% | 81.7% | |
| 4027502 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 31.0 | 3.41e-01 | 77.8% | 61.5% |
| 3261408 | 109.4.1.404 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fes1 | 0.58 | 43.0 | 2.75e-01 | 77.8% | 37.1% |
| 5077859 | 2002.1.1.12 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_1 | 0.57 | 40.0 | 2.71e-01 | 95.1% | 20.7% |
| 4983447 | 3457.1.1.3 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Arc_PepC_II | 0.54 | 45.0 | 3.14e-01 | 91.4% | 31.3% |
| 3678932 | 221.1.1.99 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UCH | 0.53 | 46.0 | 2.90e-01 | 100.0% | 93.4% |
| 4545332 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.52 | 37.0 | 3.59e-01 | 74.1% | 85.6% |
| 4979007 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.51 | 44.0 | 3.70e-01 | 96.3% | 75.0% |
| 4961941 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 45.0 | 2.94e-01 | 98.8% | 83.9% |
| 3987928 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.51 | 37.0 | 3.52e-01 | 76.5% | 65.3% |
| 3931288 | 5001.1.1.66 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Srg | 0.51 | 43.0 | 3.12e-01 | 91.4% | 59.2% |