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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015299

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015299 ↗
Kingdom:: archaea

Quality

87.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 105-192

PDB

Domain cluster: representative

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3m7kA00	3.30.40.220	Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 ›	0.75	68.0	5.75e-01	98.9%	73.2%
3afhA04	1.10.8.70	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1	0.61	35.0	4.40e-01	80.7%	98.0%
2go7A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.59	36.0	4.03e-01	90.9%	80.6%
1oaiA00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.58	31.0	3.65e-01	86.4%	74.6%
3wwhA01	3.30.470.10	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain	0.56	47.0	3.98e-01	93.2%	54.9%
3atsA02	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.53	42.0	3.12e-01	86.4%	75.0%
8agyA01	3.90.1200.10	Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe	0.52	42.0	3.11e-01	88.6%	76.2%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4979945	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.78	70.0	6.13e-01	96.6%	77.6%
3397473	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.70	59.0	5.33e-01	92.0%	66.7%
3561303	378.1.1.0 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases	0.69	61.0	4.92e-01	97.7%	51.5%
5006371	4049.1.1.0 ↗	alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like	0.68	44.0	5.12e-01	88.6%	96.7%
4953551	4049.1.1.0 ↗	alpha superhelices › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like › alpha-helical domain in siroheme synthase middle domains-like	0.63	43.0	4.78e-01	86.4%	95.4%
3928046	105.1.1.1 ↗	alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › HLH	0.52	30.0	2.99e-01	90.9%	53.7%
3244537	6060.1.1.1 ↗	alpha arrays › Yst0336-like › Yst0336-like › Yst0336-like › PBDC1	0.51	47.0	3.91e-01	98.9%	77.2%
3973692	213.1.1.51 ↗	a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FemAB_like	0.51	46.0	3.49e-01	98.9%	56.6%

D2 high residues 197-261

PDB

Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072181__D164-213

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1u3eM02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.87	62.0	6.12e-01	100.0%	70.6%
2ppxA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.68	44.0	4.57e-01	95.4%	70.5%
3bxwA03	3.10.50.10	Alpha Beta › Roll › Chitinase A; domain 3 ›	0.51	39.0	4.17e-01	100.0%	100.0%

ECOD (10)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2876	101.1.14.2 ↗	alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like	0.87	62.0	6.08e-01	100.0%	69.6%
4384880	101.1.14.3 ↗	alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1	0.81	59.0	5.35e-01	100.0%	58.8%
4414927	101.1.14.3 ↗	alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1	0.80	58.0	5.67e-01	100.0%	71.0%
3171408	101.1.14.3 ↗	alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1	0.79	55.0	6.15e-01	98.5%	96.0%
3720958	101.15.1.1 ↗	alpha arrays › HTH › LysM domain › LysM domain › LysM	0.55	39.0	4.43e-01	89.2%	96.0%
3296049	4121.1.1.2 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › MRS2-like	0.54	45.0	3.22e-01	98.5%	32.6%
3698670	101.15.1.1 ↗	alpha arrays › HTH › LysM domain › LysM domain › LysM	0.54	40.0	4.17e-01	87.7%	85.0%
3691772	101.15.1.1 ↗	alpha arrays › HTH › LysM domain › LysM domain › LysM	0.53	39.0	4.20e-01	86.2%	90.9%
3320955	101.15.1.5 ↗	alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5	0.53	39.0	3.91e-01	84.6%	76.9%
4492966	101.15.1.1 ↗	alpha arrays › HTH › LysM domain › LysM domain › LysM	0.51	37.0	3.96e-01	84.6%	90.9%

D3 medium residues 12-61

PDB

Domain cluster: rep: OL505084.1__UIE13765.1__X__00060__D15-63

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF22083.3 best	I-HmuI_NUMOD-like	35.8	6.80e-09	88.0%	80.4%