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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015304
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015304
Identity
- Kingdom:
- archaea
Quality
75.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 296-336
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wq8A00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.65 | 45.0 | 3.44e-01 | 75.6% | 73.7% |
| 3ttqA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 48.0 | 2.99e-01 | 87.8% | 80.6% |
| 1fl7D00 | 2.10.90.10 | Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines | 0.62 | 45.0 | 3.45e-01 | 80.5% | 81.1% |
| 4blqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 43.0 | 2.62e-01 | 73.2% | 60.3% |
| 2kcjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 46.0 | 3.49e-01 | 85.4% | 94.4% |
| 6mavB02 | 2.40.50.120 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 40.0 | 3.19e-01 | 70.7% | 83.9% |
| 3vwoA02 | 2.10.70.40 | Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase | 0.60 | 41.0 | 3.84e-01 | 70.7% | 80.4% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 40.0 | 3.22e-01 | 75.6% | 29.5% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 40.0 | 2.78e-01 | 73.2% | 34.2% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 41.0 | 2.87e-01 | 75.6% | 45.2% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 45.0 | 3.43e-01 | 90.2% | 42.2% |
| 1oi2A02 | 3.30.1180.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › Dihydroxyacetone kinase; domain 2 | 0.59 | 48.0 | 3.29e-01 | 97.6% | 40.7% |
| 1nltA01 | 2.60.260.20 | Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain | 0.58 | 43.0 | 3.65e-01 | 85.4% | 83.7% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.56 | 37.0 | 2.36e-01 | 70.7% | 72.8% |
| 1pvgA01 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.55 | 42.0 | 2.70e-01 | 90.2% | 64.3% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.55 | 38.0 | 3.59e-01 | 82.9% | 56.1% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.55 | 37.0 | 3.12e-01 | 70.7% | 84.8% |
| 2iteA00 | 2.60.40.1850 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 47.0 | 3.44e-01 | 100.0% | 96.7% |
| 4o3vA00 | 3.10.450.230 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein | 0.55 | 43.0 | 3.17e-01 | 100.0% | 79.0% |
| 4lgvD02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.54 | 37.0 | 2.35e-01 | 73.2% | 37.0% |
| 4czwA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.54 | 39.0 | 2.40e-01 | 90.2% | 51.0% |
| 4bqqB02 | 3.90.1750.20 | Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 | 0.53 | 41.0 | 2.79e-01 | 92.7% | 73.2% |
| 6fdfA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 37.0 | 2.49e-01 | 78.0% | 28.7% |
| 6euaA01 | 3.90.215.10 | Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 | 0.52 | 39.0 | 2.91e-01 | 87.8% | 28.8% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 42.0 | 3.33e-01 | 100.0% | 87.9% |
| 4q9cA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 2.78e-01 | 73.2% | 81.0% |
| 1darA04 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.51 | 37.0 | 2.93e-01 | 92.7% | 98.3% |
| 2ia7A00 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 36.0 | 2.79e-01 | 75.6% | 64.0% |
| 3i3lA02 | 3.30.390.160 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.50 | 37.0 | 2.92e-01 | 92.7% | 78.4% |
| 4necC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 39.0 | 2.59e-01 | 97.6% | 37.9% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4321860 | 304.48.1.17 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B_2 | 0.68 | 49.0 | 3.12e-01 | 75.6% | 37.4% |
| 5047842 | 3326.1.1.1 ↗ | alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind | 0.64 | 48.0 | 3.63e-01 | 87.8% | 33.9% |
| 3412122 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.64 | 44.0 | 2.87e-01 | 73.2% | 16.4% |
| 4227246 | 385.1.1.1 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › Cys_knot | 0.64 | 47.0 | 3.60e-01 | 82.9% | 81.9% |
| 3923319 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.64 | 45.0 | 2.78e-01 | 73.2% | 15.3% |
| 2494964 | 7055.1.1.1 ↗ | beta complex topology › Domain II of HAP2 › Domain II of HAP2 › Domain II of HAP2 › HAP2-GCS1 | 0.64 | 45.0 | 2.91e-01 | 73.2% | 14.3% |
| 3590404 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.63 | 44.0 | 3.28e-01 | 70.7% | 26.7% |
| 4642195 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.62 | 44.0 | 2.69e-01 | 75.6% | 72.2% |
| 5072330 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 42.0 | 3.59e-01 | 75.6% | 62.9% |
| 3941746 | 301.13.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › Dak1 | 0.60 | 50.0 | 3.34e-01 | 97.6% | 37.7% |
| 3969531 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.60 | 50.0 | 2.92e-01 | 100.0% | 89.6% |
| None | — | 0.59 | 41.0 | 2.53e-01 | 75.6% | 73.6% | |
| 3718004 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.59 | 41.0 | 2.55e-01 | 75.6% | 80.4% |
| 1837178 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.59 | 41.0 | 2.71e-01 | 75.6% | 28.8% |
| 4024275 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.58 | 41.0 | 3.12e-01 | 80.5% | 55.7% |
| 3223746 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 41.0 | 2.73e-01 | 78.0% | 61.7% |
| 3775460 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 40.0 | 2.95e-01 | 75.6% | 62.3% |
| 3959362 | 101.1.1.531 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › WS_DGAT_cat | 0.57 | 44.0 | 3.14e-01 | 92.7% | 37.3% |
| 4014355 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 43.0 | 3.53e-01 | 100.0% | 41.2% |
| 3441614 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.56 | 40.0 | 2.81e-01 | 87.8% | 69.7% |
| 5004281 | 4999.1.1.1 ↗ | beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX | 0.56 | 40.0 | 3.62e-01 | 78.0% | 55.0% |
| 3581414 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 39.0 | 3.65e-01 | 75.6% | 63.6% |
| 4088621 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.55 | 39.0 | 3.13e-01 | 85.4% | 61.0% |
| 3997550 | 1.1.1.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp | 0.55 | 36.0 | 2.48e-01 | 85.4% | 18.1% |
| 3794250 | 11.1.1.31 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG2 | 0.54 | 38.0 | 2.71e-01 | 75.6% | 22.1% |
| 3233110 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.54 | 39.0 | 3.11e-01 | 82.9% | 84.7% |
| 3593916 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.54 | 38.0 | 2.41e-01 | 75.6% | 81.5% |
| 5047069 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 2.77e-01 | 95.1% | 26.5% |
| 3610634 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.54 | 38.0 | 2.27e-01 | 80.5% | 49.9% |
| 3741335 | 109.4.1.338 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 | 0.53 | 43.0 | 2.68e-01 | 97.6% | 29.8% |
| 3165049 | 3218.1.1.0 ↗ | a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain | 0.53 | 42.0 | 3.77e-01 | 95.1% | 61.5% |
| 3600382 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 45.0 | 2.48e-01 | 100.0% | 25.5% |
| 3614250 | 521.1.1.1 ↗ | beta sandwiches › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor › Ecotin, trypsin inhibitor › Ecotin | 0.52 | 36.0 | 2.73e-01 | 80.5% | 79.3% |
| 3291380 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 36.0 | 2.55e-01 | 78.0% | 67.3% |
| 3228385 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.52 | 36.0 | 2.04e-01 | 87.8% | 4.7% |
D2
medium
residues 1-70
D3
medium
residues 71-228_269-289
Domain cluster:
rep: EU409559.1__ACB72572.1__X__00032__D76-201_219-245
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26125.1 best | AcrVA2-like | 28.4 | 2.60e-06 | 95.5% | 66.7% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wstA00 | 2.60.90.10 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain | 0.54 | 29.0 | 3.00e-01 | 71.5% | 50.6% |
| 4ggtB00 | 2.40.128.30 | Mainly Beta › Beta Barrel › Lipocalin › Avidin-like | 0.53 | 32.0 | 4.00e-01 | 79.9% | 98.1% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 31.0 | 3.87e-01 | 82.1% | 93.6% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 41.0 | 3.70e-01 | 84.4% | 59.4% |
| 1h4uA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 36.0 | 3.26e-01 | 72.6% | 50.6% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.52 | 27.0 | 3.62e-01 | 72.6% | 91.8% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 26.0 | 3.14e-01 | 82.7% | 73.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003221 | 241.15.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain | 0.60 | 34.0 | 4.15e-01 | 70.4% | 86.1% |
| 4955607 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.59 | 36.0 | 3.39e-01 | 72.1% | 49.8% |
| 5043905 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.58 | 36.0 | 3.34e-01 | 72.1% | 48.4% |
| 3284948 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.57 | 26.0 | 3.55e-01 | 70.4% | 84.7% |
| 3663259 | 881.1.1.1 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP | 0.54 | 28.0 | 3.16e-01 | 76.0% | 62.2% |
| 3380753 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 23.0 | 3.24e-01 | 70.4% | 83.3% |
| 4013811 | 4.8.1.22 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 | 0.51 | 28.0 | 3.63e-01 | 83.8% | 100.0% |
| 3456369 | 897.1.1.1 ↗ | a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 | 0.51 | 40.0 | 4.00e-01 | 81.6% | 82.7% |
| 4640369 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.51 | 24.0 | 3.08e-01 | 70.4% | 75.2% |
D4
medium
residues 229-268
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.73 | 55.0 | 4.52e-01 | 82.5% | 70.3% |
| 4fd5A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.72 | 60.0 | 3.76e-01 | 95.0% | 37.5% |
| 3a8pA02 | 6.10.140.680 | Special › Helix non-globular › Helix Hairpins › | 0.70 | 52.0 | 3.74e-01 | 75.0% | 28.9% |
| 5mmjn01 | 1.10.287.1480 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 50.0 | 3.91e-01 | 75.0% | 36.0% |
| 1yaxB00 | 3.30.450.140 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain | 0.68 | 46.0 | 3.25e-01 | 72.5% | 22.4% |
| 2pr1A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.57 | 38.0 | 2.67e-01 | 70.0% | 21.1% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3173834 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.76 | 57.0 | 3.26e-01 | 80.0% | 8.5% |
| 3951735 | 7581.1.1.1 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N | 0.74 | 55.0 | 3.28e-01 | 80.0% | 11.9% |
| 3721047 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.71 | 49.0 | 3.05e-01 | 72.5% | 13.2% |
| 3882215 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.70 | 47.0 | 3.60e-01 | 70.0% | 29.5% |
| 3574225 | 7581.1.1.22 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Thiolase_N, ketoacyl-synt | 0.67 | 52.0 | 3.16e-01 | 90.0% | 15.6% |