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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015311
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015311
Identity
- Kingdom:
- archaea
Quality
76.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-77
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14279.13 best | HNH_5 | 29.4 | 8.60e-07 | 72.4% | 80.4% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.75 | 56.0 | 5.46e-01 | 94.7% | 72.3% |
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.72 | 46.0 | 5.31e-01 | 100.0% | 94.3% |
| 8eb0A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 46.0 | 4.45e-01 | 80.3% | 59.3% |
| 1wimA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.70 | 47.0 | 4.38e-01 | 81.6% | 56.4% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.63 | 57.0 | 4.63e-01 | 100.0% | 54.2% |
| 2yuuA00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.61 | 35.0 | 3.43e-01 | 76.3% | 50.6% |
| 4uy8X00 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.58 | 45.0 | 4.54e-01 | 84.2% | 92.2% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.53 | 32.0 | 3.54e-01 | 72.4% | 78.9% |
| 3hcsA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.52 | 29.0 | 3.39e-01 | 88.2% | 80.8% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.52 | 38.0 | 3.59e-01 | 80.3% | 62.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932123 | 377.7.1.2 ↗ | few secondary structure elements › Glucocorticoid receptor-like › 82 prophage-derived uncharacterized protein ybcO › 82 prophage-derived uncharacterized protein ybcO › HNH | 0.79 | 56.0 | 5.81e-01 | 82.9% | 80.0% |
| 4959094 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.78 | 48.0 | 5.54e-01 | 84.2% | 85.5% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.77 | 57.0 | 5.50e-01 | 92.1% | 69.4% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.76 | 59.0 | 5.40e-01 | 100.0% | 63.9% |
| 4839749 | 3821.1.1.0 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain › CRISPR-associated endonuclease Cas9 beta-hairpin domain | 0.75 | 44.0 | 5.48e-01 | 75.0% | 100.0% |
| 5016552 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.72 | 52.0 | 4.54e-01 | 82.9% | 51.8% |
| 3285436 | 3380.1.1.0 ↗ | a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 | 0.72 | 53.0 | 5.84e-01 | 92.1% | 100.0% |
| 4943720 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 49.0 | 4.12e-01 | 84.2% | 44.0% |
| 3395505 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.70 | 41.0 | 5.01e-01 | 80.3% | 97.8% |
| 3244384 | 376.1.1.151 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2, PF30896 | 0.68 | 41.0 | 3.37e-01 | 81.6% | 33.3% |
| 5068785 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.68 | 37.0 | 4.68e-01 | 80.3% | 100.0% |
| 4932487 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.68 | 43.0 | 4.47e-01 | 100.0% | 70.0% |
| 3286658 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.68 | 60.0 | 4.93e-01 | 96.1% | 63.1% |
| 3926338 | 376.1.1.94 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_IRF-2BP1_2 | 0.67 | 45.0 | 4.13e-01 | 77.6% | 54.7% |
| 3229548 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 33.0 | 4.08e-01 | 77.6% | 77.8% |
| 4966035 | 376.1.3.98 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › DUF7562 | 0.66 | 44.0 | 4.79e-01 | 72.4% | 86.7% |
| 5010149 | 377.1.1.131 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TRASH_HVO_1752_C | 0.66 | 36.0 | 4.47e-01 | 80.3% | 100.0% |
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.64 | 57.0 | 4.62e-01 | 100.0% | 54.2% |
| 3590055 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.63 | 54.0 | 4.67e-01 | 92.1% | 73.9% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.62 | 53.0 | 4.66e-01 | 93.4% | 63.6% |
| 3233860 | 101.1.1.488 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Lin-15B | 0.60 | 44.0 | 3.72e-01 | 76.3% | 77.6% |
| 3977489 | 377.1.1.117 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › PF27493 | 0.60 | 38.0 | 4.46e-01 | 81.6% | 96.0% |
| 3577651 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.60 | 42.0 | 4.51e-01 | 86.8% | 84.6% |
| 3080542 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.57 | 49.0 | 4.58e-01 | 92.1% | 91.2% |
| 3649408 | 4232.1.1.1 ↗ | few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 | 0.54 | 45.0 | 4.51e-01 | 90.8% | 89.7% |