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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015344

Arc-Vir

IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015344

Identity

Kingdom:
archaea

Quality

86.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-97
PDB
Domain cluster: rep: SR-VP_0-2_scaffold_141_4750547_curated_closed_complete_prodigal-single.1__X__X__00484__D112-203
CATH (20)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.69 58.0 4.87e-01 90.4% 70.8%
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.66 41.0 4.50e-01 76.6% 76.3%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.66 41.0 4.35e-01 81.9% 69.9%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 47.0 4.36e-01 79.8% 92.5%
4osnA00 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.59 45.0 4.27e-01 79.8% 95.5%
3fvcA03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.59 44.0 4.23e-01 79.8% 94.5%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.58 44.0 3.91e-01 79.8% 75.0%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.57 45.0 4.12e-01 83.0% 100.0%
5x6vG00 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 47.0 4.23e-01 94.7% 68.2%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 34.0 3.37e-01 93.6% 57.7%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 41.0 3.88e-01 83.0% 96.6%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 41.0 4.21e-01 81.9% 93.2%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.53 38.0 4.15e-01 93.6% 92.1%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.52 38.0 3.62e-01 78.7% 68.4%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 38.0 3.53e-01 93.6% 59.8%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 37.0 3.58e-01 77.7% 91.0%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.51 43.0 3.55e-01 92.6% 94.8%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.51e-01 79.8% 71.8%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 43.0 4.10e-01 93.6% 78.1%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 42.0 3.97e-01 93.6% 76.3%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969162 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.62 33.0 3.96e-01 86.2% 78.3%
5076734 2004.1.1.164 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Roc 0.60 41.0 3.35e-01 70.2% 44.4%
5024071 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 45.0 4.20e-01 93.6% 67.0%
3202709 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 51.0 4.33e-01 98.9% 92.5%
4944328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 47.0 4.26e-01 94.7% 65.4%
3672678 222.1.1.0 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.57 38.0 3.99e-01 75.5% 75.3%
4348606 4.1.1.440 ↗ beta barrels › SH3 › SH3 › SH3 › PF27165 0.57 34.0 3.95e-01 79.8% 86.2%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.56 39.0 3.37e-01 93.6% 43.9%
5045741 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 38.0 4.31e-01 70.2% 100.0%
3739664 247.1.1.38 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.55 32.0 3.56e-01 78.7% 74.3%
3493361 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.55 44.0 4.06e-01 86.2% 92.5%
4251848 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 43.0 3.82e-01 95.7% 57.2%
3992641 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.54 34.0 3.85e-01 76.6% 84.3%
4018116 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 41.0 3.83e-01 94.7% 63.6%
3209694 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.54 34.0 3.35e-01 92.6% 58.0%
3549045 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 35.0 3.36e-01 93.6% 57.3%
3728783 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.53 41.0 3.67e-01 85.1% 92.1%
3269549 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 39.0 3.37e-01 79.8% 60.0%
3409245 223.2.1.36 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 0.53 43.0 4.30e-01 92.6% 90.0%
3623755 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.53 43.0 4.04e-01 93.6% 72.2%
5000843 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 44.0 4.17e-01 93.6% 81.7%
3797523 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 35.0 3.22e-01 93.6% 50.0%
4028315 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.52 41.0 3.94e-01 86.2% 91.8%
4944880 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 43.0 4.02e-01 91.5% 72.5%
4939731 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 34.0 3.95e-01 89.4% 96.9%
5024072 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 42.0 4.05e-01 93.6% 78.1%
3408937 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.51 36.0 3.84e-01 93.6% 86.3%
3933098 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 31.0 3.55e-01 78.7% 89.2%
3286982 330.6.1.0 ↗ a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.50 36.0 3.52e-01 84.0% 68.3%
3403839 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 32.0 3.25e-01 92.6% 65.6%
4943458 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 42.0 3.83e-01 94.7% 67.7%
3479661 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 33.0 3.21e-01 94.7% 57.3%