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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015354
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015354
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-137
Domain cluster:
rep: IMGVR_UViG_3300000172_000310-3300000172-SI34jun09_200mDRAFT_10025738__D4-144
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02698.24 best | DUF218 | 78.2 | 7.70e-22 | 97.7% | 77.3% |
CATH (72)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ca8A02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.83 | 80.0 | 7.48e-01 | 100.0% | 92.3% |
| 4nzpA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.75 | 61.0 | 6.05e-01 | 100.0% | 82.6% |
| 1yt8A02 | 3.40.250.10 | Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain | 0.72 | 41.0 | 4.56e-01 | 100.0% | 69.4% |
| 4q6bA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.71 | 46.0 | 4.66e-01 | 100.0% | 65.7% |
| 4gx0B04 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.70 | 48.0 | 4.87e-01 | 100.0% | 71.0% |
| 2l82A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.70 | 53.0 | 5.03e-01 | 100.0% | 66.7% |
| 7wm5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.69 | 51.0 | 4.41e-01 | 100.0% | 49.3% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 43.0 | 4.35e-01 | 74.4% | 62.4% |
| 1dnpA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.67 | 60.0 | 6.06e-01 | 100.0% | 97.7% |
| 6hcdD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.67 | 58.0 | 5.80e-01 | 100.0% | 91.9% |
| 2bonA01 | 3.40.50.10330 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Probable inorganic polyphosphate/atp-NAD kinase; domain 1 | 0.67 | 44.0 | 4.49e-01 | 100.0% | 68.0% |
| 3lucA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 48.0 | 4.96e-01 | 100.0% | 77.3% |
| 4xfjB01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.67 | 61.0 | 5.62e-01 | 100.0% | 82.1% |
| 1u04A03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.66 | 46.0 | 4.21e-01 | 100.0% | 53.4% |
| 1jmvA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 61.0 | 6.00e-01 | 100.0% | 95.7% |
| 3ct6A00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.65 | 43.0 | 4.34e-01 | 100.0% | 66.9% |
| 4gc5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 54.0 | 4.49e-01 | 100.0% | 51.5% |
| 1up7A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 52.0 | 5.21e-01 | 100.0% | 82.5% |
| 2pg3A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.65 | 59.0 | 4.98e-01 | 100.0% | 67.7% |
| 3my7A02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.65 | 59.0 | 5.26e-01 | 100.0% | 97.3% |
| 3e3mA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 53.0 | 5.16e-01 | 88.0% | 93.8% |
| 2h0aA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 52.0 | 5.23e-01 | 88.0% | 98.5% |
| 1fduB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 58.0 | 4.53e-01 | 100.0% | 81.4% |
| 2piaA02 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.63 | 50.0 | 5.22e-01 | 100.0% | 91.7% |
| 3s55E00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 58.0 | 4.60e-01 | 100.0% | 86.1% |
| 4lgvA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 57.0 | 5.06e-01 | 100.0% | 69.3% |
| 1v84A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.63 | 58.0 | 4.70e-01 | 100.0% | 89.4% |
| 1jhdA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.62 | 57.0 | 4.92e-01 | 100.0% | 67.5% |
| 1bwpA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 45.0 | 3.82e-01 | 74.4% | 82.1% |
| 7e5wA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 51.0 | 5.19e-01 | 88.0% | 99.2% |
| 5bq3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 51.0 | 4.84e-01 | 88.7% | 88.4% |
| 5b3kA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.62 | 45.0 | 4.33e-01 | 75.2% | 67.3% |
| 1xo1A02 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.62 | 52.0 | 4.96e-01 | 100.0% | 76.7% |
| 1iv0A00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.61 | 41.0 | 4.69e-01 | 100.0% | 92.9% |
| 4fr2A01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 50.0 | 4.51e-01 | 88.0% | 88.6% |
| 1augA00 | 3.40.630.20 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Peptidase C15, pyroglutamyl peptidase I-like | 0.60 | 43.0 | 3.76e-01 | 75.9% | 79.5% |
| 2e4uA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 48.0 | 4.45e-01 | 88.0% | 76.3% |
| 5uzxA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 53.0 | 4.45e-01 | 100.0% | 77.5% |
| 3gnlA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 54.0 | 5.04e-01 | 100.0% | 81.8% |
| 2l69A00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.59 | 45.0 | 4.54e-01 | 100.0% | 80.6% |
| 1s4nB00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.58 | 53.0 | 3.95e-01 | 100.0% | 79.1% |
| 1cmwA01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.58 | 51.0 | 4.91e-01 | 97.0% | 90.7% |
| 1ipaA02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.58 | 51.0 | 4.90e-01 | 100.0% | 83.7% |
| 2kpoA00 | 3.40.50.11230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 4.83e-01 | 96.2% | 98.2% |
| 6xm1C01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.57 | 47.0 | 4.75e-01 | 89.5% | 95.4% |
| 3hh8A02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 38.0 | 3.91e-01 | 79.7% | 69.5% |
| 1qv9A01 | 3.40.50.10830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) | 0.56 | 46.0 | 4.37e-01 | 100.0% | 74.0% |
| 1lucA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.56 | 51.0 | 3.84e-01 | 100.0% | 92.3% |
| 3go2A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.56 | 41.0 | 3.21e-01 | 100.0% | 37.1% |
| 3gbvA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 48.0 | 4.63e-01 | 93.2% | 93.3% |
| 8oqkA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 38.0 | 4.27e-01 | 100.0% | 90.3% |
| 4pioA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 4.31e-01 | 93.2% | 92.8% |
| 3hcwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 48.0 | 4.70e-01 | 93.2% | 94.4% |
| 2f6uA00 | 3.20.20.390 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases | 0.55 | 43.0 | 3.55e-01 | 81.2% | 68.8% |
| 1ri5A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 46.0 | 3.82e-01 | 93.2% | 83.7% |
| 4v19S00 | 3.30.420.80 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribosomal protein S11/S14 | 0.55 | 40.0 | 3.99e-01 | 79.7% | 71.3% |
| 3hwrA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 46.0 | 4.26e-01 | 100.0% | 71.6% |
| 1szpB02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 49.0 | 4.25e-01 | 99.2% | 74.4% |
| 2f48A01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 48.0 | 3.77e-01 | 100.0% | 45.3% |
| 6rqaA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 49.0 | 4.56e-01 | 100.0% | 97.1% |
| 2b8tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 4.07e-01 | 87.2% | 75.5% |
| 3t8qA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.54 | 48.0 | 3.89e-01 | 97.0% | 86.6% |
| 4e4yA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 48.0 | 3.98e-01 | 100.0% | 86.8% |
| 3bh0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 48.0 | 3.79e-01 | 100.0% | 74.3% |
| 3vthA04 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 47.0 | 3.88e-01 | 100.0% | 92.8% |
| 1xovA01 | 3.40.630.40 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases | 0.52 | 48.0 | 4.38e-01 | 100.0% | 78.5% |
| 2e2oA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.52 | 39.0 | 3.94e-01 | 78.2% | 80.9% |
| 2fwrA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 47.0 | 4.27e-01 | 100.0% | 80.9% |
| 2e8yA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.29e-01 | 100.0% | 88.5% |
| 4a8jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 46.0 | 3.65e-01 | 99.2% | 61.4% |
| 1i39A01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.51 | 44.0 | 4.24e-01 | 100.0% | 80.6% |
| 4a8jB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 40.0 | 3.46e-01 | 100.0% | 51.8% |
ECOD (75)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3979709 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.95 | 87.0 | 7.46e-01 | 100.0% | 65.8% |
| 3282791 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.95 | 87.0 | 7.71e-01 | 100.0% | 71.4% |
| 3963923 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.94 | 85.0 | 7.64e-01 | 100.0% | 72.3% |
| 3971387 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.93 | 82.0 | 6.86e-01 | 100.0% | 58.5% |
| 3278238 | 2005.1.1.45 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF218 | 0.93 | 86.0 | 8.16e-01 | 100.0% | 84.0% |
| 3286102 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.93 | 85.0 | 7.43e-01 | 100.0% | 68.1% |
| 4033573 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.92 | 86.0 | 6.91e-01 | 100.0% | 55.7% |
| 3280711 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.92 | 81.0 | 7.03e-01 | 100.0% | 64.2% |
| 4579452 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.92 | 83.0 | 6.89e-01 | 100.0% | 59.0% |
| 3286171 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.90 | 85.0 | 7.29e-01 | 100.0% | 66.7% |
| 3252192 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.90 | 87.0 | 7.68e-01 | 100.0% | 77.8% |
| 3166170 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.90 | 84.0 | 7.15e-01 | 100.0% | 65.6% |
| 3507232 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.89 | 87.0 | 7.54e-01 | 100.0% | 71.9% |
| 3590641 | 2005.1.1.45 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DUF218 | 0.89 | 86.0 | 7.78e-01 | 100.0% | 78.2% |
| 4273678 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.88 | 83.0 | 6.47e-01 | 100.0% | 51.6% |
| 3967473 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.88 | 83.0 | 7.04e-01 | 100.0% | 65.0% |
| 3942559 | 2005.2.1.1 ↗ | a/b three-layered sandwiches › HUP domain-like › YdcF › YdcF › DUF218 | 0.83 | 79.0 | 6.10e-01 | 100.0% | 54.0% |
| 4358213 | 7512.1.1.9 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › LpxB | 0.75 | 55.0 | 4.77e-01 | 100.0% | 50.5% |
| 3899989 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.73 | 65.0 | 6.06e-01 | 100.0% | 78.8% |
| 3592491 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.71 | 59.0 | 6.21e-01 | 100.0% | 100.0% |
| 3704350 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.71 | 59.0 | 5.80e-01 | 100.0% | 83.5% |
| 3763738 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.70 | 64.0 | 5.86e-01 | 100.0% | 77.1% |
| 3452376 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.70 | 61.0 | 5.99e-01 | 100.0% | 88.2% |
| 4486112 | 7592.1.1.3 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N | 0.69 | 56.0 | 5.74e-01 | 100.0% | 90.4% |
| 3937265 | 7590.1.1.6 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › ArgoMid | 0.69 | 50.0 | 4.54e-01 | 100.0% | 57.6% |
| 5011207 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.69 | 61.0 | 6.19e-01 | 99.2% | 98.4% |
| 5009930 | 7592.1.1.6 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N | 0.69 | 59.0 | 5.95e-01 | 100.0% | 91.1% |
| 3855879 | 2006.1.4.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like | 0.69 | 63.0 | 5.76e-01 | 100.0% | 77.1% |
| 5007602 | 2003.1.1.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › TrkA_N | 0.68 | 47.0 | 4.82e-01 | 100.0% | 74.4% |
| 2391911 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.67 | 58.0 | 5.80e-01 | 100.0% | 91.9% |
| 9796 | 2005.1.1.9 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › DNA_photolyase | 0.67 | 60.0 | 5.17e-01 | 100.0% | 64.0% |
| 3810687 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.66 | 61.0 | 5.57e-01 | 100.0% | 84.1% |
| 1347888 | 7579.1.1.97 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1, EHN | 0.65 | 49.0 | 4.11e-01 | 100.0% | 47.3% |
| 4961825 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.65 | 58.0 | 5.62e-01 | 100.0% | 88.0% |
| 4946146 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.65 | 55.0 | 5.53e-01 | 100.0% | 91.1% |
| 1253054 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.64 | 53.0 | 5.28e-01 | 88.0% | 97.8% |
| 5040706 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.64 | 58.0 | 5.75e-01 | 100.0% | 94.3% |
| 5055283 | 7516.1.1.24 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transf_3 | 0.64 | 57.0 | 4.90e-01 | 97.0% | 99.0% |
| 1253058 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.64 | 51.0 | 5.24e-01 | 88.7% | 91.1% |
| 4022820 | 7514.1.1.6 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › PF26733 | 0.64 | 54.0 | 4.91e-01 | 100.0% | 68.3% |
| 4065999 | 2007.1.19.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › SAT | 0.63 | 58.0 | 4.53e-01 | 100.0% | 95.4% |
| 4151896 | 2005.1.1.15 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP-sulfurylase | 0.63 | 57.0 | 4.88e-01 | 100.0% | 61.9% |
| 3972343 | 2484.6.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR | 0.63 | 37.0 | 4.35e-01 | 100.0% | 84.4% |
| 4074951 | 7514.1.1.4 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › DmmA-like_N | 0.63 | 50.0 | 5.25e-01 | 100.0% | 93.3% |
| 4046038 | 2484.6.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD | 0.63 | 35.0 | 4.30e-01 | 98.5% | 88.7% |
| 4018513 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.62 | 43.0 | 4.16e-01 | 100.0% | 61.9% |
| 3387219 | 2484.6.1.1 ↗ | mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD | 0.62 | 35.0 | 4.13e-01 | 100.0% | 81.1% |
| 3975544 | 2007.1.2.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_3 | 0.61 | 50.0 | 5.12e-01 | 88.7% | 98.5% |
| 3172133 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.61 | 55.0 | 5.11e-01 | 100.0% | 93.3% |
| 3615387 | 2003.1.5.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD | 0.60 | 53.0 | 4.31e-01 | 100.0% | 50.6% |
| 5069523 | 2007.1.13.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Lumazine synthase | 0.60 | 41.0 | 4.47e-01 | 100.0% | 85.2% |
| 3785857 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.60 | 54.0 | 4.98e-01 | 100.0% | 93.7% |
| 3768565 | 2007.1.6.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain | 0.60 | 48.0 | 4.88e-01 | 100.0% | 85.7% |
| 3744115 | 7514.1.1.3 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_6 | 0.60 | 54.0 | 5.00e-01 | 100.0% | 87.0% |
| 2709610 | 2011.4.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) › Peptidase_C15 | 0.59 | 43.0 | 3.73e-01 | 75.9% | 94.0% |
| 4255201 | 2484.1.1.7 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_S11 | 0.59 | 41.0 | 4.44e-01 | 100.0% | 84.5% |
| 4771675 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.59 | 45.0 | 4.54e-01 | 100.0% | 80.6% |
| 1674673 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.58 | 50.0 | 4.97e-01 | 94.7% | 97.8% |
| 3946483 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.57 | 50.0 | 3.88e-01 | 95.5% | 67.2% |
| 4027084 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.57 | 51.0 | 4.62e-01 | 100.0% | 96.8% |
| 3214951 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.56 | 46.0 | 4.35e-01 | 88.0% | 76.9% |
| 5076479 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.56 | 51.0 | 4.46e-01 | 100.0% | 79.0% |
| 4968002 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.56 | 45.0 | 3.83e-01 | 85.7% | 78.6% |
| 4480051 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.55 | 46.0 | 4.23e-01 | 88.7% | 80.0% |
| None | — | 0.55 | 48.0 | 3.57e-01 | 93.2% | 74.8% | |
| 1239322 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.55 | 49.0 | 3.89e-01 | 97.0% | 82.1% |
| 5039591 | 7512.1.1.13 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PS_pyruv_trans | 0.55 | 49.0 | 4.20e-01 | 100.0% | 66.0% |
| 1115751 | 2007.1.4.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › PFK | 0.55 | 48.0 | 4.07e-01 | 100.0% | 58.6% |
| 1239298 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.54 | 48.0 | 3.91e-01 | 97.0% | 85.2% |
| 4945275 | 2007.1.4.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain | 0.54 | 41.0 | 4.30e-01 | 100.0% | 87.5% |
| 4927887 | 2484.1.1.10 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD | 0.54 | 47.0 | 3.66e-01 | 93.2% | 79.9% |
| 144283 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.54 | 48.0 | 3.87e-01 | 97.0% | 84.9% |
| 1123736 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.52 | 46.0 | 3.49e-01 | 97.7% | 88.8% |
| 4950698 | 2004.1.1.211 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P | 0.50 | 45.0 | 4.00e-01 | 100.0% | 76.9% |
| 3731717 | 2008.3.1.1 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Eukaryotic RPB5 N-terminal domain › Eukaryotic RPB5 N-terminal domain › RNA_pol_Rpb5_N | 0.50 | 42.0 | 4.08e-01 | 93.2% | 97.4% |
D2
medium
residues 144-203_233-261
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3i2wA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.70 | 60.0 | 4.23e-01 | 92.1% | 86.8% |
| 2cmrA00 | 1.20.58.1860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 49.0 | 3.89e-01 | 95.5% | 65.6% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4932876 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.79 | 57.0 | 5.11e-01 | 73.0% | 85.2% |
| 5076024 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.63 | 53.0 | 4.88e-01 | 91.0% | 73.9% |
| 3628221 | 603.3.1.1 ↗ | alpha bundles › STAT-like › CAPPD, an extracellular domain of amyloid beta A4 protein › CAPPD, an extracellular domain of amyloid beta A4 protein › APP_E2 | 0.62 | 56.0 | 4.05e-01 | 98.9% | 72.7% |
| 3733449 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 53.0 | 2.90e-01 | 95.5% | 59.0% |
| 3928270 | 604.33.1.0 ↗ | alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain | 0.55 | 45.0 | 4.45e-01 | 86.5% | 86.3% |
| 3452083 | 7002.1.1.5 ↗ | alpha duplicates or obligate multimers › TM trimerization region of envelope glycoprotein B › TM trimerization region of envelope glycoprotein B › TM trimerization region of envelope glycoprotein B › DUF2985 | 0.52 | 44.0 | 3.54e-01 | 92.1% | 70.9% |