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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015356
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015356
Identity
- Kingdom:
- archaea
Quality
73.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-84
D2
high
residues 122-303
Domain cluster:
rep: rifoxyb1_full_scaffold_4_prodigal-single.1__X__X__00018__D59-190
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13298.13 best | LigD_N | 52.2 | 8.40e-14 | 47.2% | 69.2% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6c6sD02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 21.0 | 3.57e-01 | 83.5% | 91.7% |
| 2jozA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 29.0 | 3.93e-01 | 88.5% | 89.6% |
| 2acaA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.58 | 41.0 | 4.27e-01 | 90.1% | 75.9% |
| 4q63A00 | 2.40.10.430 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 24.0 | 3.30e-01 | 75.3% | 73.1% |
| 7emfR01 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.57 | 43.0 | 4.46e-01 | 91.2% | 82.9% |
| 3pu2B00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 26.0 | 2.86e-01 | 92.3% | 51.0% |
| 1pbyA02 | 2.40.128.120 | Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 | 0.53 | 30.0 | 3.87e-01 | 70.3% | 95.3% |
| 2gfgA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.52 | 42.0 | 4.13e-01 | 92.9% | 79.1% |
| 2ffsA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 27.0 | 3.02e-01 | 89.6% | 61.4% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.51 | 27.0 | 3.61e-01 | 98.9% | 94.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 998899 | 58.2.1.1 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N | 0.94 | 60.0 | 7.54e-01 | 81.9% | 99.2% |
| 3959638 | 58.2.1.0 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain | 0.85 | 60.0 | 6.75e-01 | 83.5% | 90.3% |
| 1692496 | 58.2.1.1 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N | 0.82 | 61.0 | 6.34e-01 | 83.0% | 81.1% |
| 3689071 | 58.2.1.1 ↗ | beta barrels › Oncogene product-like › LigD phosphoesterase domain › LigD phosphoesterase domain › LigD_N | 0.75 | 59.0 | 5.21e-01 | 90.1% | 58.7% |
| 408353 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.55 | 26.0 | 2.86e-01 | 91.8% | 51.3% |
| 1833882 | 9.4.1.3 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › Pab87_oct | 0.51 | 27.0 | 3.70e-01 | 98.4% | 100.0% |