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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015374
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015374
Identity
- Kingdom:
- archaea
Quality
79.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-30_103-159
Domain cluster:
rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00192__D4-29_98-152
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gi8C00 | 1.20.1740.10 | Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I | 0.75 | 66.0 | 4.16e-01 | 98.8% | 59.5% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.70 | 50.0 | 4.57e-01 | 75.0% | 81.2% |
| 2cazD00 | 6.10.140.820 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 41.0 | 4.94e-01 | 76.2% | 86.7% |
| 3cb6A02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.67 | 60.0 | 4.22e-01 | 100.0% | 95.1% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 41.0 | 4.73e-01 | 89.3% | 100.0% |
| 1wleA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.60 | 44.0 | 3.89e-01 | 76.2% | 55.3% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 41.0 | 4.62e-01 | 85.7% | 96.8% |
| 3qqaA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 39.0 | 4.61e-01 | 100.0% | 98.3% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.58 | 51.0 | 3.84e-01 | 100.0% | 73.5% |
| 1xo0A01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.57 | 44.0 | 3.98e-01 | 91.7% | 61.3% |
| 2odmA00 | 1.10.287.750 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like | 0.57 | 43.0 | 4.41e-01 | 83.3% | 83.5% |
| 3b1fA02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.56 | 39.0 | 3.58e-01 | 100.0% | 55.0% |
| 3favD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.56 | 39.0 | 4.07e-01 | 76.2% | 78.2% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 51.0 | 3.94e-01 | 100.0% | 54.9% |
| 4fx0A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 40.0 | 3.53e-01 | 77.4% | 97.5% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.54 | 39.0 | 4.14e-01 | 75.0% | 94.6% |
| 1vryA00 | 6.10.250.2810 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 31.0 | 3.60e-01 | 86.9% | 80.3% |
| 6qv4A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 37.0 | 2.87e-01 | 73.8% | 70.6% |
| 3c18A02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.53 | 43.0 | 3.81e-01 | 86.9% | 94.9% |
| 1zb1A00 | 1.25.40.280 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains | 0.51 | 44.0 | 2.84e-01 | 94.0% | 39.0% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.50 | 42.0 | 2.88e-01 | 96.4% | 84.1% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.50 | 43.0 | 3.74e-01 | 100.0% | 68.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3515453 | 108.1.1.73 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 | 0.74 | 60.0 | 5.69e-01 | 86.9% | 100.0% |
| 3494078 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 49.0 | 5.47e-01 | 91.7% | 95.4% |
| 3530101 | 601.19.1.17 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2 | 0.67 | 55.0 | 3.79e-01 | 86.9% | 50.2% |
| 3731848 | 283.1.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 | 0.67 | 59.0 | 4.13e-01 | 100.0% | 92.4% |
| 3959976 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.60 | 47.0 | 3.89e-01 | 84.5% | 48.7% |
| 4994765 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.59 | 48.0 | 4.54e-01 | 88.1% | 80.0% |
| 3579534 | 192.29.1.144 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › SK_channel | 0.59 | 47.0 | 3.53e-01 | 83.3% | 75.7% |
| 3773905 | 604.3.1.33 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › RSLD_CPSF6 | 0.58 | 40.0 | 4.19e-01 | 92.9% | 80.0% |
| 4567957 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 45.0 | 4.00e-01 | 82.1% | 73.0% |
| 3739207 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.57 | 48.0 | 4.72e-01 | 97.6% | 100.0% |
| 3172910 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.57 | 45.0 | 4.12e-01 | 82.1% | 78.1% |
| 3986794 | 639.2.1.1 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB | 0.56 | 39.0 | 4.14e-01 | 81.0% | 85.7% |
| 4387552 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.56 | 43.0 | 4.33e-01 | 81.0% | 85.9% |
| 3510771 | 610.4.1.0 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain | 0.56 | 46.0 | 4.35e-01 | 92.9% | 76.0% |
| 4646569 | 4994.1.1.1 ↗ | alpha duplicates or obligate multimers › EF2458-like › EF2458-like › EF2458-like › DUF1507 | 0.55 | 44.0 | 4.23e-01 | 84.5% | 76.8% |
| 4055723 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.54 | 38.0 | 3.66e-01 | 78.6% | 64.2% |
| 4015744 | 4958.1.1.0 ↗ | a+b complex topology › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit › second helical domain in RNA-polymerase beta-prime subunit | 0.53 | 41.0 | 3.05e-01 | 84.5% | 61.3% |
| 3224632 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 39.0 | 3.62e-01 | 82.1% | 80.0% |
| 3624507 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.51 | 39.0 | 3.51e-01 | 82.1% | 71.3% |
D2
high
residues 35-93
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 42.0 | 3.95e-01 | 93.2% | 50.7% |
| 1u0kA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.66 | 34.0 | 2.60e-01 | 89.8% | 21.2% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.63 | 37.0 | 2.77e-01 | 100.0% | 21.4% |
| 3c19A02 | 3.10.20.300 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain | 0.63 | 39.0 | 3.58e-01 | 94.9% | 47.4% |
| 4joiC00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.61 | 46.0 | 3.78e-01 | 100.0% | 42.4% |
| 3mpxA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.61 | 38.0 | 3.23e-01 | 100.0% | 38.1% |
| 3tk9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 45.0 | 3.74e-01 | 84.7% | 93.5% |
| 4p2iA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 46.0 | 3.73e-01 | 89.8% | 88.9% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.57 | 39.0 | 3.72e-01 | 100.0% | 59.2% |
| 1dleB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 43.0 | 3.39e-01 | 86.4% | 77.5% |
| 2f20A00 | 3.90.1680.10 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like | 0.55 | 47.0 | 3.17e-01 | 96.6% | 53.6% |
| 2x36D00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 38.0 | 2.84e-01 | 76.3% | 62.9% |
| 1euvB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 36.0 | 3.28e-01 | 71.2% | 86.1% |
| 2ok5A02 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.52 | 43.0 | 3.02e-01 | 96.6% | 95.0% |
| 2yzcA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.52 | 45.0 | 2.91e-01 | 100.0% | 58.5% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 34.0 | 3.17e-01 | 93.2% | 51.3% |
| 5aj3P00 | 3.30.1320.10 | Alpha Beta › 2-Layer Sandwich › S16 Ribosomal Protein; Chain: A; › Ribosomal protein S16 | 0.52 | 43.0 | 3.52e-01 | 100.0% | 47.9% |
| 1orvA02 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 40.0 | 2.65e-01 | 100.0% | 19.8% |
| 2gefA01 | 2.30.42.30 | Mainly Beta › Roll › Pdz3 Domain › | 0.51 | 45.0 | 3.64e-01 | 100.0% | 71.4% |
| 1wx8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 34.0 | 2.97e-01 | 71.2% | 71.9% |
| 3ssoA01 | 3.30.1050.30 | Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › | 0.50 | 37.0 | 2.80e-01 | 81.4% | 64.9% |
| 3iylB03 | 2.60.120.420 | Mainly Beta › Sandwich › Jelly Rolls › Membrane penetration protein mu1, Chain B, domain 4 | 0.50 | 40.0 | 2.88e-01 | 100.0% | 63.3% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3786981 | 381.1.1.0 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat | 0.68 | 37.0 | 2.69e-01 | 100.0% | 20.1% |
| 3970890 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.68 | 42.0 | 4.27e-01 | 93.2% | 61.7% |
| 3839929 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.68 | 42.0 | 4.18e-01 | 94.9% | 58.7% |
| 3805766 | 4.1.1.28 ↗ | beta barrels › SH3 › SH3 › SH3 › BPL_C | 0.67 | 41.0 | 4.22e-01 | 93.2% | 65.5% |
| 3651210 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.64 | 42.0 | 4.21e-01 | 100.0% | 65.0% |
| 3066252 | 4032.1.1.1 ↗ | beta complex topology › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › barrel domains in phase 1 flagellin › Flagellin_IN | 0.62 | 34.0 | 2.82e-01 | 88.1% | 29.4% |
| 4238582 | 3174.2.1.1 ↗ | beta barrels › Ribosomal protein L14-like › Barrel domain in flagellar protein FlgA › Barrel domain in flagellar protein FlgA › ChapFlgA | 0.57 | 37.0 | 3.77e-01 | 100.0% | 65.0% |
| 3419351 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.56 | 38.0 | 3.70e-01 | 100.0% | 64.6% |
| 3198414 | 906.2.1.0 ↗ | few secondary structure elements › CCCH zinc finger › SSP1 C3H-type zinc finger › SSP1 C3H-type zinc finger | 0.56 | 28.0 | 3.52e-01 | 96.6% | 90.0% |
| 1560746 | 3233.1.1.0 ↗ | beta sandwiches › Ig-like domain in putative lipoprotein BF3042-related proteins › Ig-like domain in putative lipoprotein BF3042-related proteins › Ig-like domain in putative lipoprotein BF3042-related proteins | 0.55 | 40.0 | 2.92e-01 | 76.3% | 63.0% |
| 3878508 | 60.1.1.12 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Treslin_M | 0.54 | 45.0 | 3.59e-01 | 94.9% | 52.8% |
| 3452542 | 3407.1.1.0 ↗ | mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.54 | 41.0 | 3.37e-01 | 81.4% | 95.2% |
| 4848452 | 135.1.1.1 ↗ | alpha arrays › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › Transducin (alpha subunit), insertion domain › G-alpha | 0.51 | 30.0 | 3.29e-01 | 100.0% | 71.4% |
| 3787728 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.51 | 38.0 | 3.62e-01 | 81.4% | 74.3% |
| 2526349 | 4.33.1.0 ↗ | beta barrels › SH3 | 0.50 | 37.0 | 3.78e-01 | 94.9% | 89.5% |
| 3911887 | 230.1.1.1 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › Uricase | 0.50 | 42.0 | 3.54e-01 | 100.0% | 86.4% |