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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015402
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015402
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-38_83-118
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03167.26 best | UDG | 27.3 | 4.80e-06 | 93.2% | 24.3% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ui0A00 | 3.40.470.10 | Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain | 0.97 | 88.0 | 6.16e-01 | 93.2% | 58.9% |
| 3s2cA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.55 | 38.0 | 2.53e-01 | 73.0% | 24.0% |
| 1irxA04 | 1.10.10.770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.53 | 45.0 | 4.06e-01 | 100.0% | 100.0% |
| 7vyjB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 46.0 | 3.51e-01 | 100.0% | 89.2% |
| 1q7lB01 | 1.10.150.900 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.53 | 44.0 | 4.32e-01 | 97.3% | 96.3% |
| 1nu7D01 | 1.20.120.750 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Staphylcoagulase, helix bundle domain 1 | 0.52 | 39.0 | 3.26e-01 | 81.1% | 88.9% |
| 1vomA01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.52 | 44.0 | 2.91e-01 | 98.6% | 47.9% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4990486 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.97 | 90.0 | 6.39e-01 | 97.3% | 61.1% |
| 5021506 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.96 | 88.0 | 6.25e-01 | 94.6% | 61.1% |
| 4943408 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.95 | 85.0 | 5.93e-01 | 93.2% | 58.5% |
| 4968429 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.92 | 88.0 | 6.23e-01 | 100.0% | 59.5% |
| 4352085 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.92 | 88.0 | 6.13e-01 | 100.0% | 57.5% |
| 3960892 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.92 | 87.0 | 6.18e-01 | 100.0% | 64.7% |
| 4962559 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.90 | 79.0 | 5.66e-01 | 91.9% | 59.5% |
| 4937539 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.80 | 71.0 | 5.18e-01 | 94.6% | 60.5% |
| 4964088 | 7569.1.1.1 ↗ | a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG | 0.69 | 62.0 | 4.46e-01 | 95.9% | 55.8% |
| 4377299 | 304.18.1.0 ↗ | a+b two layers › Alpha-beta plaits › Anticodon-binding domain of PheRS › Anticodon-binding domain of PheRS | 0.58 | 47.0 | 4.28e-01 | 91.9% | 76.2% |
| 3573601 | 148.1.3.17 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid | 0.52 | 35.0 | 3.19e-01 | 95.9% | 50.5% |
| 3646869 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.52 | 45.0 | 2.96e-01 | 100.0% | 57.1% |
| 3341060 | 6155.1.1.6 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › DUF2921 | 0.52 | 35.0 | 3.41e-01 | 100.0% | 62.4% |
| 3514807 | 3615.1.1.26 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Piezo_TM1-24 | 0.51 | 44.0 | 3.63e-01 | 100.0% | 91.7% |
D2
medium
residues 39-82_119-195
Domain cluster:
rep: MK016493.1__AYQ99350.1__PBI_CANTARE_130__00130__D75-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03167.26 best | UDG | 37.7 | 3.00e-09 | 36.4% | 27.9% |