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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015415
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015415
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 101-187
Domain cluster:
rep: GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00588__D98-170
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a04A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.85 | 52.0 | 5.42e-01 | 92.0% | 67.5% |
| 3fnbA01 | 1.20.1440.110 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › acylaminoacyl peptidase | 0.62 | 43.0 | 3.98e-01 | 93.1% | 55.3% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.60 | 41.0 | 4.05e-01 | 90.8% | 66.7% |
| 1b4pA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 38.0 | 3.67e-01 | 95.4% | 55.2% |
| 2vxgA02 | 1.10.220.100 | Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › conserved c-terminal region of ge- 1 | 0.58 | 44.0 | 4.48e-01 | 92.0% | 82.4% |
| 4o6kA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 43.0 | 3.72e-01 | 100.0% | 50.7% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.57 | 51.0 | 4.68e-01 | 100.0% | 79.8% |
| 3u5nA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 50.0 | 4.49e-01 | 100.0% | 76.7% |
| 3cf6E03 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.56 | 50.0 | 4.36e-01 | 98.9% | 87.8% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.56 | 40.0 | 4.24e-01 | 97.7% | 84.6% |
| 5mmjo00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.55 | 42.0 | 4.44e-01 | 92.0% | 94.7% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 47.0 | 4.68e-01 | 98.9% | 89.1% |
| 1vs5O00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.54 | 44.0 | 4.43e-01 | 96.6% | 89.8% |
| 4dlqA02 | 1.25.40.610 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.54 | 38.0 | 3.76e-01 | 87.4% | 68.4% |
| 3fnrA01 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.53 | 47.0 | 4.01e-01 | 100.0% | 87.6% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 40.0 | 3.85e-01 | 95.4% | 68.6% |
| 2z4vA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 46.0 | 3.23e-01 | 100.0% | 32.2% |
| 7ocsB01 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.53 | 40.0 | 3.27e-01 | 94.3% | 41.0% |
| 5hb0D01 | 1.20.120.1880 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleoporin, helical C-terminal domain | 0.52 | 47.0 | 3.38e-01 | 100.0% | 41.0% |
| 1u84A00 | 1.10.340.20 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain | 0.51 | 42.0 | 4.34e-01 | 89.7% | 100.0% |
| 1zymA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.51 | 37.0 | 3.32e-01 | 100.0% | 52.4% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3730705 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 44.0 | 5.73e-01 | 82.8% | 96.0% |
| 3293600 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.80 | 64.0 | 6.09e-01 | 83.9% | 95.0% |
| 4944094 | 4156.1.1.7 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DUF5814 | 0.78 | 71.0 | 5.81e-01 | 98.9% | 98.0% |
| 3931733 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.77 | 54.0 | 5.46e-01 | 72.4% | 90.6% |
| 3789417 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 61.0 | 5.50e-01 | 87.4% | 93.0% |
| 3584520 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 58.0 | 5.32e-01 | 83.9% | 66.4% |
| 3680378 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 59.0 | 5.68e-01 | 87.4% | 90.0% |
| 3406182 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.71 | 56.0 | 5.23e-01 | 85.1% | 99.1% |
| 3941363 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.71 | 47.0 | 3.49e-01 | 90.8% | 26.7% |
| 3812799 | 101.1.1.291 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26175 | 0.70 | 46.0 | 5.21e-01 | 77.0% | 90.8% |
| 3170086 | 101.1.1.122 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUP | 0.69 | 56.0 | 5.49e-01 | 87.4% | 86.3% |
| 3871164 | 108.1.1.120 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › PF27858 | 0.63 | 39.0 | 3.47e-01 | 94.3% | 42.4% |
| 3590178 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.61 | 49.0 | 3.35e-01 | 85.1% | 93.4% |
| 4547736 | 604.12.1.111 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › PF27331 | 0.61 | 46.0 | 4.66e-01 | 94.3% | 82.4% |
| 167309 | 592.2.1.3 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › Nab2 | 0.60 | 45.0 | 4.23e-01 | 79.3% | 81.0% |
| 3193541 | 3788.1.1.26 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › PXA | 0.59 | 35.0 | 3.43e-01 | 90.8% | 53.7% |
| 3782945 | 101.1.1.81 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Cdh1_DBD_1 | 0.58 | 44.0 | 3.98e-01 | 81.6% | 96.7% |
| 5022737 | 1030.1.1.1 ↗ | alpha duplicates or obligate multimers › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Crispr-associated protein Csm2 › Csm2_III-A | 0.57 | 46.0 | 3.77e-01 | 100.0% | 46.2% |
| 3606464 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.56 | 48.0 | 3.38e-01 | 97.7% | 35.9% |
| 3794203 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.56 | 41.0 | 4.22e-01 | 79.3% | 81.2% |
| 4655422 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.55 | 46.0 | 3.72e-01 | 93.1% | 52.9% |
| 3583099 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 49.0 | 3.60e-01 | 100.0% | 48.7% |
| 4098111 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.54 | 47.0 | 3.83e-01 | 97.7% | 70.9% |
| 3973987 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.54 | 43.0 | 3.82e-01 | 86.2% | 83.9% |
| 3688869 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.52 | 46.0 | 3.43e-01 | 100.0% | 70.0% |
| 4423589 | 601.25.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › TrmE connector domain › TrmE connector domain › MnmE_helical | 0.52 | 45.0 | 3.66e-01 | 98.9% | 71.8% |
| 5013299 | 148.1.3.407 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF2391 | 0.51 | 41.0 | 3.82e-01 | 90.8% | 79.1% |
| 3812846 | 633.15.1.1 ↗ | alpha bundles › Bromodomain-like › alpha-ketoacid dehydrogenase kinase-N › alpha-ketoacid dehydrogenase kinase-N › BCDHK_Adom3 | 0.50 | 44.0 | 3.65e-01 | 100.0% | 88.7% |
D2
medium
residues 33-99_197-212
Domain cluster:
rep: GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00588__D14-92
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08281.19 best | Sigma70_r4_2 | 38.8 | 7.90e-10 | 65.1% | 83.3% |
| PF04545.23 | Sigma70_r4 | 47.3 | 1.60e-12 | 59.0% | 96.0% |