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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015642
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015642
Identity
- Kingdom:
- archaea
Quality
88.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 43-98_274-366
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4dk0A02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.68 | 41.0 | 5.18e-01 | 100.0% | 100.0% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.66 | 42.0 | 4.94e-01 | 100.0% | 91.3% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.64 | 39.0 | 4.94e-01 | 96.0% | 98.9% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.63 | 42.0 | 4.96e-01 | 100.0% | 96.2% |
| 1eq9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.62 | 35.0 | 4.13e-01 | 90.6% | 78.1% |
| 1ep3B01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 38.0 | 4.57e-01 | 96.0% | 97.0% |
| 1a5iA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 36.0 | 3.99e-01 | 90.6% | 75.4% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.56 | 32.0 | 3.46e-01 | 91.3% | 65.6% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.89e-01 | 96.0% | 98.8% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 34.0 | 3.67e-01 | 90.6% | 75.8% |
| 1vq8B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 37.0 | 3.89e-01 | 95.3% | 79.6% |
| 1lp9E02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.44e-01 | 93.3% | 92.5% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.51 | 32.0 | 3.76e-01 | 99.3% | 92.2% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 30.0 | 3.52e-01 | 97.3% | 89.5% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3387966 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 40.0 | 5.25e-01 | 96.0% | 97.6% |
| 5011498 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 41.0 | 5.15e-01 | 96.0% | 95.5% |
| 3971461 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 40.0 | 4.99e-01 | 100.0% | 100.0% |
| 4131100 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.65 | 45.0 | 4.76e-01 | 100.0% | 77.8% |
| 4050380 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.65 | 41.0 | 4.99e-01 | 94.6% | 98.9% |
| 3987460 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.64 | 45.0 | 5.15e-01 | 100.0% | 97.3% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.64 | 41.0 | 4.51e-01 | 100.0% | 80.0% |
| 3944005 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.63 | 42.0 | 4.43e-01 | 99.3% | 75.2% |
| 4372074 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.62 | 43.0 | 4.46e-01 | 100.0% | 75.0% |
| 4062509 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.61 | 41.0 | 4.82e-01 | 100.0% | 96.2% |
| 3973696 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.61 | 42.0 | 4.57e-01 | 100.0% | 83.2% |
| 3967199 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 40.0 | 4.73e-01 | 100.0% | 97.1% |
| 3973898 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.60 | 45.0 | 4.56e-01 | 100.0% | 79.3% |
| 3974575 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 38.0 | 4.60e-01 | 99.3% | 98.0% |
| 4273561 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.59 | 44.0 | 4.60e-01 | 100.0% | 83.7% |
| 3973282 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.59 | 42.0 | 4.77e-01 | 100.0% | 98.2% |
| 4466667 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.58 | 43.0 | 4.83e-01 | 100.0% | 98.3% |
| 3988580 | 1.1.7.95 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25990 | 0.58 | 41.0 | 4.72e-01 | 100.0% | 98.2% |
| 3981111 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.58 | 42.0 | 4.19e-01 | 100.0% | 71.0% |
| 3340540 | 1.1.17.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Nal1_C | 0.58 | 38.0 | 3.13e-01 | 87.2% | 36.0% |
| 3386975 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 42.0 | 4.77e-01 | 96.0% | 97.4% |
| 3971757 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 43.0 | 4.78e-01 | 100.0% | 98.3% |
| 3968995 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.57 | 41.0 | 4.66e-01 | 96.6% | 96.5% |
| 4075020 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.57 | 41.0 | 4.28e-01 | 99.3% | 80.4% |
| 3722811 | 1.1.7.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_8 | 0.57 | 40.0 | 4.51e-01 | 96.0% | 95.7% |
| 3946710 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 41.0 | 4.56e-01 | 100.0% | 94.2% |
| 3947204 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.56 | 41.0 | 4.45e-01 | 95.3% | 86.9% |
| 4441129 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.56 | 39.0 | 4.33e-01 | 100.0% | 89.2% |
| 4010415 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 43.0 | 4.42e-01 | 99.3% | 84.1% |
| 5052888 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 40.0 | 4.36e-01 | 100.0% | 91.2% |
| 3576438 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 25.0 | 3.14e-01 | 99.3% | 71.1% |
| 4319057 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.54 | 35.0 | 3.90e-01 | 91.9% | 84.3% |
| 3949068 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.53 | 43.0 | 4.46e-01 | 99.3% | 90.7% |
| 3988859 | 1.1.7.91 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 | 0.53 | 35.0 | 4.06e-01 | 93.3% | 95.2% |
| 4980688 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.53 | 32.0 | 3.96e-01 | 94.0% | 100.0% |
| 4202370 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.50 | 28.0 | 3.27e-01 | 85.9% | 77.0% |
D2
medium
residues 191-273
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2aw6A02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.51 | 35.0 | 2.72e-01 | 72.3% | 81.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1293726 | 150.7.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PE › PE › PE | 0.94 | 53.0 | 5.33e-01 | 83.1% | 56.5% |
| 3954313 | 150.5.1.52 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE | 0.81 | 50.0 | 4.82e-01 | 88.0% | 54.7% |
| 3174776 | 4177.1.1.5 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 | 0.78 | 61.0 | 4.34e-01 | 84.3% | 30.2% |
| 3980443 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.73 | 64.0 | 5.69e-01 | 94.0% | 73.0% |
| 3387205 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.70 | 48.0 | 4.69e-01 | 80.7% | 64.4% |
| 3277932 | 150.5.1.52 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PE | 0.70 | 50.0 | 4.91e-01 | 74.7% | 70.0% |
| 4457710 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 52.0 | 4.50e-01 | 90.4% | 56.7% |
| 5081366 | 601.33.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain | 0.60 | 43.0 | 3.41e-01 | 74.7% | 55.2% |
| 3178397 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 39.0 | 2.98e-01 | 74.7% | 57.9% |