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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015653

Arc-Vir

IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_1000015653

Identity

Kingdom:
archaea

Quality

45.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 135-199
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_3489769_prodigal-single.1__X__X__00235__D11-75
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.74 63.0 5.82e-01 100.0% 74.7%
1h3dA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.64 44.0 3.44e-01 87.7% 35.1%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.59 42.0 2.70e-01 76.9% 22.4%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.59 43.0 2.84e-01 81.5% 46.6%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.58 46.0 4.01e-01 90.8% 64.8%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 43.0 3.81e-01 81.5% 95.0%
4emoC00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.67e-01 83.1% 94.0%
2ablA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.58 43.0 3.81e-01 81.5% 92.8%
2bbuA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.57 42.0 3.35e-01 83.1% 87.8%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.09e-01 81.5% 84.5%
3fssA01 2.30.29.120 Mainly Beta › Roll › PH-domain like › 0.57 42.0 3.36e-01 80.0% 91.9%
2xkoC01 2.30.30.660 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3539) 0.56 35.0 3.85e-01 72.3% 83.3%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.56 44.0 3.63e-01 93.8% 92.1%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.56 41.0 3.66e-01 83.1% 88.5%
2r1iA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 44.0 3.65e-01 93.8% 83.1%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 34.0 3.38e-01 72.3% 57.7%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.57e-01 80.0% 38.7%
4l3aA03 2.60.40.3890 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.76e-01 92.3% 92.9%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 44.0 3.41e-01 93.8% 86.6%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.54 41.0 3.31e-01 86.2% 55.5%
1celA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.54 41.0 2.58e-01 87.7% 48.3%
4mcxF00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.53 37.0 3.39e-01 73.8% 65.9%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 39.0 3.67e-01 81.5% 89.3%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 39.0 3.54e-01 83.1% 100.0%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.60e-01 73.8% 97.3%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 39.0 3.43e-01 81.5% 81.0%
1m61A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 38.0 3.42e-01 83.1% 89.4%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 38.0 3.40e-01 83.1% 93.3%
1ybiA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 42.0 3.43e-01 96.9% 90.1%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 37.0 3.31e-01 78.5% 82.0%
3gv4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.51 43.0 3.85e-01 100.0% 91.9%
2ltsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 37.0 3.42e-01 78.5% 70.9%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 39.0 3.79e-01 84.6% 77.8%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.63e-01 75.4% 84.1%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.50 35.0 2.92e-01 76.9% 82.9%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.50 35.0 3.21e-01 76.9% 100.0%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3466771 375.3.1.2 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.80 59.0 6.39e-01 87.7% 92.7%
3415237 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 45.0 3.18e-01 80.0% 23.7%
4992408 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 37.0 4.36e-01 80.0% 88.9%
5039125 375.1.1.83 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB 0.61 42.0 4.24e-01 72.3% 72.3%
3511270 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.59 43.0 3.68e-01 81.5% 82.5%
3933015 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 41.0 4.59e-01 96.9% 100.0%
None — 0.57 42.0 3.33e-01 80.0% 71.3%
3472650 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.57 41.0 3.40e-01 78.5% 73.1%
3253803 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.56 39.0 3.55e-01 72.3% 53.3%
3552038 4099.1.1.20 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.56 43.0 3.17e-01 87.7% 41.0%
4332725 295.1.1.2 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › SsgA 0.56 46.0 3.86e-01 100.0% 73.8%
4210084 394.1.1.3 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › DUF5401 0.56 37.0 3.87e-01 75.4% 75.9%
3851566 4099.1.1.20 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.56 42.0 3.49e-01 87.7% 60.7%
3513932 214.1.1.10 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7145 0.56 42.0 3.67e-01 87.7% 97.4%
3189324 375.1.1.319 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 0.55 41.0 4.08e-01 80.0% 88.6%
3177251 216.1.1.41 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › PF29959 0.55 41.0 3.28e-01 84.6% 85.8%
3697558 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.55 41.0 3.59e-01 81.5% 78.1%
2132873 214.1.1.6 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_2 0.55 39.0 3.39e-01 76.9% 78.9%
3496663 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 43.0 2.87e-01 87.7% 33.8%
3700010 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 2.55e-01 75.4% 41.0%
3383781 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.55 35.0 3.87e-01 81.5% 86.0%
3902978 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 43.0 2.86e-01 92.3% 90.3%
3610932 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.54 45.0 3.64e-01 100.0% 76.4%
3926352 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.54 41.0 3.54e-01 87.7% 67.0%
3725026 243.6.1.4 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.53 39.0 3.42e-01 81.5% 60.0%
3608162 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.52 42.0 3.25e-01 95.4% 74.5%
5003966 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 39.0 3.94e-01 87.7% 86.2%
5072901 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 41.0 3.88e-01 92.3% 85.0%
4375016 210.1.1.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome,Proteasome_A_N 0.51 41.0 2.89e-01 95.4% 74.5%
4939670 5.1.3.20 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PD40 0.51 40.0 2.71e-01 92.3% 88.7%
3782705 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 36.0 2.70e-01 80.0% 89.7%
137757 4312.1.1.9 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › MqsR_toxin 0.50 35.0 3.21e-01 76.9% 100.0%
3456571 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 39.0 2.72e-01 92.3% 23.7%
3218646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 34.0 3.44e-01 81.5% 69.2%
D2 medium residues 1-114
PDB