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IMGVR_UViG_3300028840_006907-3300028840-Ga0309773_100001587
Arc-VirIMGVR_UViG_3300028840_006907-3300028840-Ga0309773_100001587
Identity
- Kingdom:
- archaea
Quality
87.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-109
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ifsA01 | 2.30.29.150 | Mainly Beta › Roll › PH-domain like › | 0.58 | 43.0 | 4.01e-01 | 77.6% | 64.4% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.54 | 39.0 | 3.36e-01 | 74.8% | 77.2% |
| 7x36A01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.52 | 37.0 | 2.73e-01 | 74.8% | 73.2% |
| 1x6cA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 43.0 | 4.23e-01 | 97.2% | 82.2% |
| 1vwxr00 | 3.30.390.110 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.52 | 39.0 | 3.79e-01 | 96.3% | 69.6% |
| 3aabB00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.21e-01 | 83.2% | 61.3% |
| 4g6tA00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.51 | 42.0 | 4.02e-01 | 96.3% | 75.8% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4927878 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.68 | 36.0 | 3.63e-01 | 78.5% | 50.0% |
| 4106961 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.68 | 42.0 | 3.40e-01 | 99.1% | 33.3% |
| 4397552 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.63 | 35.0 | 3.34e-01 | 80.4% | 45.6% |
| 4219295 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.61 | 32.0 | 3.06e-01 | 82.2% | 42.3% |
| 3199439 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 33.0 | 2.74e-01 | 76.6% | 28.4% |
| 5003854 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.60 | 33.0 | 3.30e-01 | 79.4% | 50.4% |
| 3324935 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.59 | 33.0 | 3.43e-01 | 82.2% | 57.0% |
| 3932908 | 633.23.1.5 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like | 0.59 | 40.0 | 3.15e-01 | 82.2% | 33.2% |
| 3814715 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.58 | 32.0 | 3.35e-01 | 79.4% | 56.0% |
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.57 | 39.0 | 4.38e-01 | 91.6% | 92.5% |
| 4028630 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 29.0 | 3.52e-01 | 77.6% | 78.5% |
| 4218926 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 32.0 | 3.12e-01 | 82.2% | 49.2% |
| 5046724 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.56 | 33.0 | 3.22e-01 | 80.4% | 52.2% |
| 3443030 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.55 | 38.0 | 4.25e-01 | 89.7% | 95.0% |
| 3345971 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.55 | 31.0 | 3.20e-01 | 79.4% | 57.0% |
| 3323289 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.55 | 30.0 | 3.63e-01 | 77.6% | 81.4% |
| 4124957 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.54 | 34.0 | 2.73e-01 | 98.1% | 29.5% |
| 3650231 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.54 | 31.0 | 3.19e-01 | 83.2% | 56.2% |
| 4203354 | 252.2.1.9 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF27551 | 0.53 | 39.0 | 4.09e-01 | 93.5% | 85.3% |
| 3398694 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.53 | 38.0 | 3.90e-01 | 92.5% | 76.2% |
| 3629934 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.52 | 32.0 | 2.91e-01 | 83.2% | 42.8% |
| 3705745 | 221.13.1.0 ↗ | a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain | 0.52 | 38.0 | 3.63e-01 | 77.6% | 96.2% |
| 4235772 | 243.3.1.11 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Staphopain_pro | 0.52 | 40.0 | 3.49e-01 | 82.2% | 87.2% |
| 3617021 | 3209.1.1.1 ↗ | a+b two layers › RPL28 › RPL28 › RPL28 › Ribosomal_L28e | 0.51 | 40.0 | 3.73e-01 | 96.3% | 65.9% |