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IMGVR_UViG_3300028886_003655-3300028886-Ga0256407_1000181638
Arc-VirIMGVR_UViG_3300028886_003655-3300028886-Ga0256407_1000181638
Identity
- Kingdom:
- archaea
Quality
68.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-45
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7febA01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.74 | 54.0 | 3.76e-01 | 78.0% | 100.0% |
| 2iksB02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 51.0 | 3.46e-01 | 100.0% | 21.0% |
| 2j49A00 | 1.25.40.500 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain | 0.67 | 53.0 | 3.72e-01 | 90.2% | 84.3% |
| 3nbkD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.65 | 49.0 | 3.33e-01 | 100.0% | 20.9% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.65 | 50.0 | 3.70e-01 | 100.0% | 30.5% |
| 3a1iA02 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.64 | 48.0 | 2.79e-01 | 82.9% | 61.9% |
| 3dciA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.63 | 52.0 | 3.36e-01 | 100.0% | 40.6% |
| 4o8mD00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.62 | 51.0 | 3.13e-01 | 100.0% | 13.3% |
| 3zyvC06 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.62 | 49.0 | 3.00e-01 | 87.8% | 54.1% |
| 4c0rA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.61 | 43.0 | 3.39e-01 | 100.0% | 32.4% |
| 4cp8E00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.61 | 43.0 | 2.46e-01 | 75.6% | 9.1% |
| 4rk2A00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.60 | 47.0 | 2.77e-01 | 100.0% | 9.2% |
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.60 | 42.0 | 3.36e-01 | 78.0% | 38.9% |
| 4ga6A02 | 1.20.970.50 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › | 0.60 | 50.0 | 3.38e-01 | 95.1% | 27.6% |
| 3m21F00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.59 | 47.0 | 4.20e-01 | 97.6% | 67.2% |
| 4ovqA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.59 | 46.0 | 2.86e-01 | 100.0% | 12.9% |
| 1avaA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.58 | 47.0 | 2.84e-01 | 100.0% | 24.9% |
| 5xilA02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.58 | 49.0 | 3.56e-01 | 100.0% | 38.3% |
| 3cisH00 | 3.40.50.12370 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 46.0 | 2.89e-01 | 100.0% | 18.4% |
| 2fqqA01 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 44.0 | 3.33e-01 | 100.0% | 54.9% |
| 7jt8I01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.58 | 46.0 | 2.97e-01 | 100.0% | 19.9% |
| 3qq5A02 | 3.40.50.11420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 44.0 | 3.42e-01 | 100.0% | 35.8% |
| 6nqbC01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 44.0 | 3.55e-01 | 92.7% | 44.0% |
| 4ua8A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 42.0 | 2.95e-01 | 100.0% | 21.1% |
| 4mcoA00 | 3.40.190.170 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7 | 0.56 | 44.0 | 2.69e-01 | 92.7% | 72.2% |
| 2dhmA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.56 | 43.0 | 3.62e-01 | 100.0% | 46.7% |
| 3khtA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.56 | 39.0 | 2.94e-01 | 82.9% | 100.0% |
| 6a8mA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.54 | 47.0 | 3.12e-01 | 97.6% | 52.0% |
| 3i2tA01 | 3.80.20.20 | Alpha Beta › Alpha-Beta Horseshoe › 24 nucleotide stem-loop, u2 snrnp hairpin iv. U2 a'; Chain A › Receptor L-domain | 0.54 | 44.0 | 2.99e-01 | 100.0% | 35.0% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3458011 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.82 | 64.0 | 3.93e-01 | 100.0% | 14.9% |
| 4025619 | 7566.1.1.2 ↗ | a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N | 0.74 | 63.0 | 3.99e-01 | 100.0% | 43.8% |
| 3476516 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.73 | 62.0 | 3.92e-01 | 100.0% | 19.1% |
| 5052305 | 2004.1.1.119 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA | 0.71 | 60.0 | 3.96e-01 | 100.0% | 23.0% |
| 3499225 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.70 | 58.0 | 3.50e-01 | 100.0% | 13.6% |
| 3304970 | 8002.1.1.1 ↗ | alpha bundles › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › Zn-binding domain in glutaminyl-tRNA synthetase › tRNA-synt_1c | 0.68 | 53.0 | 3.99e-01 | 100.0% | 33.0% |
| 4188980 | 327.9.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain › KH_dom-like | 0.67 | 49.0 | 3.93e-01 | 78.0% | 72.9% |
| 3421244 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.67 | 56.0 | 3.78e-01 | 100.0% | 27.3% |
| 3964816 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.65 | 48.0 | 3.29e-01 | 100.0% | 20.6% |
| 5035436 | 2008.1.1.16 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat | 0.64 | 55.0 | 3.94e-01 | 100.0% | 36.3% |
| 3954691 | 7565.1.1.1 ↗ | a/b three-layered sandwiches › Resolvase-like › Resolvase-like › Resolvase-like › Resolvase | 0.64 | 50.0 | 3.73e-01 | 100.0% | 30.4% |
| 1524150 | 7523.1.1.16 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP | 0.64 | 52.0 | 3.85e-01 | 100.0% | 32.5% |
| 3960538 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.64 | 49.0 | 3.41e-01 | 100.0% | 24.1% |
| 5037677 | 2007.1.10.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › PrpR receptor domain-like | 0.63 | 51.0 | 4.10e-01 | 100.0% | 43.2% |
| 4969715 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 54.0 | 3.37e-01 | 100.0% | 52.8% |
| 3962618 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 49.0 | 3.62e-01 | 100.0% | 30.8% |
| 4554875 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.63 | 50.0 | 3.13e-01 | 97.6% | 16.1% |
| 5081179 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.63 | 46.0 | 2.79e-01 | 100.0% | 11.1% |
| 4009323 | 327.6.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P | 0.62 | 48.0 | 3.67e-01 | 100.0% | 33.9% |
| 3196644 | 2007.15.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › N-deoxyribosyltransferase › N-deoxyribosyltransferase | 0.62 | 49.0 | 3.61e-01 | 100.0% | 60.0% |
| 3383819 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.61 | 49.0 | 3.35e-01 | 100.0% | 55.7% |
| 3170415 | 7522.1.1.0 ↗ | a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like | 0.61 | 46.0 | 3.51e-01 | 100.0% | 33.1% |
| 5066472 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.60 | 46.0 | 3.61e-01 | 92.7% | 37.1% |
| 3955971 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.59 | 45.0 | 3.43e-01 | 100.0% | 52.3% |
| 3278386 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.59 | 46.0 | 3.48e-01 | 100.0% | 33.1% |
| 3716885 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.59 | 47.0 | 2.90e-01 | 100.0% | 13.1% |
| 4960499 | 2004.1.1.45 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MutS_V | 0.59 | 44.0 | 2.79e-01 | 100.0% | 13.3% |
| 4069907 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.58 | 48.0 | 3.28e-01 | 100.0% | 24.7% |
| 4943626 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.58 | 47.0 | 3.46e-01 | 92.7% | 32.5% |
| 5001425 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.58 | 44.0 | 3.16e-01 | 97.6% | 25.5% |
| 4483252 | 2498.1.1.22 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY | 0.58 | 41.0 | 2.80e-01 | 75.6% | 38.0% |
| 3366793 | 7512.1.1.90 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › DUF7810 | 0.57 | 43.0 | 3.00e-01 | 100.0% | 22.6% |
| 3337681 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 44.0 | 3.96e-01 | 100.0% | 58.6% |
| 4025662 | 327.9.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain › KH_dom-like | 0.57 | 47.0 | 3.94e-01 | 100.0% | 51.2% |
| 3320834 | 2005.1.1.41 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_C | 0.57 | 44.0 | 3.20e-01 | 100.0% | 28.4% |
| 4666978 | 327.9.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain | 0.56 | 45.0 | 3.70e-01 | 100.0% | 45.6% |
| 4579743 | 101.1.2.6 ↗ | alpha arrays › HTH › HTH › winged helix domain › GntR | 0.56 | 47.0 | 3.75e-01 | 95.1% | 48.2% |
| 3400847 | 301.1.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › Ribosomal_L7Ae | 0.55 | 46.0 | 3.26e-01 | 97.6% | 65.9% |
| 4218879 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.55 | 43.0 | 3.10e-01 | 100.0% | 26.5% |
| 4492083 | 309.1.2.3 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain › tRNA-Thr_ED | 0.55 | 45.0 | 3.33e-01 | 100.0% | 36.0% |
| 4659593 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.55 | 41.0 | 3.16e-01 | 100.0% | 31.7% |
| 4579381 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.55 | 43.0 | 3.08e-01 | 100.0% | 25.6% |
| 4484979 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.54 | 43.0 | 3.01e-01 | 100.0% | 24.4% |
| 3932467 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 41.0 | 2.83e-01 | 100.0% | 23.8% |
| 5043077 | 316.1.1.27 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Polbeta | 0.53 | 46.0 | 3.29e-01 | 97.6% | 31.5% |
| 4522962 | 2484.1.1.25 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC | 0.51 | 40.0 | 2.78e-01 | 100.0% | 23.4% |
| 3333116 | 323.1.1.28 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding_C | 0.51 | 38.0 | 2.67e-01 | 100.0% | 22.8% |
| 3716939 | 2485.1.1.4 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA | 0.51 | 37.0 | 3.37e-01 | 100.0% | 53.3% |