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IMGVR_UViG_3300028890_000002-3300028890-Ga0310354_10101446

Arc-Vir

IMGVR_UViG_3300028890_000002-3300028890-Ga0310354_10101446

Identity

Kingdom:
archaea

Quality

79.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-49
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a8dA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.61 50.0 3.34e-01 100.0% 87.4%
2conA00 6.20.210.10 Special › Other non-globular › Herpes Virus-1 › Nin one binding (NOB1), Zn-ribbon-like 0.59 40.0 3.37e-01 100.0% 40.5%
2zuvA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 47.0 3.75e-01 100.0% 43.4%
4cbpB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 3.38e-01 100.0% 39.4%
1cs6A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 44.0 3.55e-01 100.0% 41.9%
4tpuA02 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 38.0 4.04e-01 100.0% 94.6%
2v5tA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.44e-01 100.0% 45.7%
5lznA00 3.10.20.360 Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain 0.52 43.0 3.31e-01 97.8% 55.0%
3s6xC03 2.10.25.20 Mainly Beta › Ribbon › Laminin › reovirus attachment protein sigma1; domain 1 0.50 34.0 3.60e-01 86.7% 82.5%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957583 3386.2.1.0 ↗ beta sandwiches › gp9 C-terminal domain-like › gp10 domain 2 and domain 3 › gp10 domain 2 and domain 3 0.76 67.0 5.71e-01 100.0% 62.9%
3937771 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.59 49.0 3.24e-01 100.0% 21.0%
3906762 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 4.31e-01 100.0% 97.1%
4025536 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 45.0 3.67e-01 100.0% 55.0%
4225090 2002.1.1.160 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lact_bio_phlase 0.56 47.0 2.75e-01 100.0% 10.8%
3701337 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.56 44.0 3.33e-01 100.0% 42.2%
4301121 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.56 44.0 3.50e-01 100.0% 49.6%
4012780 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 43.0 3.30e-01 100.0% 40.7%
3648086 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 43.0 3.33e-01 100.0% 66.2%
3718397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 34.0 3.61e-01 88.9% 74.3%
3219195 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 46.0 3.62e-01 100.0% 43.8%
3271769 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.69e-01 100.0% 46.3%
5047262 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.54 42.0 3.29e-01 100.0% 44.0%
3493441 11.1.5.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box 0.54 45.0 2.97e-01 100.0% 39.0%
4325327 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 3.87e-01 100.0% 94.3%
4278212 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.54 42.0 3.24e-01 100.0% 42.3%
4118889 1.1.7.50 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.54 42.0 3.25e-01 100.0% 45.4%
4029670 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.54 41.0 3.26e-01 100.0% 48.0%
3580358 11.1.5.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › T-box 0.53 43.0 3.15e-01 100.0% 54.7%
3717155 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.13e-01 100.0% 82.9%
5012781 2.1.1.51 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EXOSC1 0.52 36.0 2.75e-01 80.0% 86.9%
3645788 2004.1.1.334 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 2.46e-01 88.9% 92.7%
5067766 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 35.0 2.68e-01 80.0% 86.8%
D2 high residues 100-150
PDB
D3 medium residues 53-97_151-169
PDB
Domain cluster: representative
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3542805 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.66 47.0 4.21e-01 75.0% 81.1%
3339208 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.62 52.0 3.70e-01 98.4% 51.4%
4986343 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.54 44.0 3.17e-01 100.0% 99.6%
3651072 109.4.1.1241 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HIR3_bundle 0.51 38.0 2.38e-01 79.7% 47.8%