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IMGVR_UViG_3300028917_000377-3300028917-Ga0310070_10387315
Arc-VirIMGVR_UViG_3300028917_000377-3300028917-Ga0310070_10387315
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-83_186-330
Domain cluster:
rep: IMGVR_UViG_648028040_000001-648028040-648194435__D26-229
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF04984.20 best | Phage_sheath_1 | 58.1 | 1.40e-15 | 70.9% | 92.9% |
CATH (61)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4wutA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.69 | 43.0 | 4.97e-01 | 94.6% | 82.2% |
| 1eucB03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.69 | 47.0 | 5.48e-01 | 72.9% | 96.6% |
| 5ul3A01 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.68 | 51.0 | 5.69e-01 | 93.6% | 100.0% |
| 2pmqA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.67 | 43.0 | 4.09e-01 | 76.4% | 55.6% |
| 1wueA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.66 | 42.0 | 4.15e-01 | 100.0% | 58.6% |
| 6norA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.64 | 45.0 | 5.25e-01 | 94.6% | 99.3% |
| 2ddmB00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.64 | 52.0 | 4.70e-01 | 84.7% | 88.9% |
| 1puiA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 46.0 | 4.96e-01 | 73.9% | 98.8% |
| 3dmyA03 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.63 | 48.0 | 5.29e-01 | 78.8% | 100.0% |
| 1jxhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.62 | 51.0 | 4.75e-01 | 84.7% | 89.9% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 40.0 | 4.76e-01 | 78.3% | 96.2% |
| 2p8bA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.60 | 44.0 | 4.22e-01 | 100.0% | 64.7% |
| 3f4wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 44.0 | 4.42e-01 | 100.0% | 73.0% |
| 3q41A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.60 | 52.0 | 5.40e-01 | 95.6% | 97.9% |
| 1sfjB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.60 | 48.0 | 4.59e-01 | 100.0% | 73.0% |
| 1pzxB01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.60 | 36.0 | 4.40e-01 | 100.0% | 96.7% |
| 3td9A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 54.0 | 5.45e-01 | 95.6% | 99.0% |
| 1vqtA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 41.0 | 4.23e-01 | 100.0% | 74.3% |
| 2oqhA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.59 | 46.0 | 4.33e-01 | 100.0% | 67.1% |
| 5dn8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 45.0 | 4.93e-01 | 78.8% | 98.8% |
| 1e8cB03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.58 | 38.0 | 4.43e-01 | 80.8% | 92.3% |
| 3vc5A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.58 | 47.0 | 4.41e-01 | 100.0% | 70.8% |
| 3tx6A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 52.0 | 5.21e-01 | 95.6% | 97.1% |
| 2pgwA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.58 | 44.0 | 4.29e-01 | 100.0% | 72.4% |
| 1td2A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 53.0 | 4.68e-01 | 98.5% | 97.9% |
| 1lhpA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.57 | 52.0 | 4.56e-01 | 98.5% | 98.4% |
| 2fpoC00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 37.0 | 3.98e-01 | 94.1% | 72.9% |
| 1mkyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 41.0 | 4.61e-01 | 74.9% | 98.0% |
| 3qllA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.56 | 45.0 | 4.47e-01 | 100.0% | 79.5% |
| 4nk4F00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 50.0 | 4.66e-01 | 96.6% | 94.6% |
| 3qldA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.56 | 42.0 | 4.05e-01 | 100.0% | 68.0% |
| 3umoA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 50.0 | 4.37e-01 | 98.5% | 99.0% |
| 7va8A01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.55 | 51.0 | 4.68e-01 | 100.0% | 97.3% |
| 1wx0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 43.0 | 4.25e-01 | 100.0% | 78.7% |
| 1kczA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.54 | 48.0 | 4.59e-01 | 100.0% | 82.1% |
| 1cr2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 43.0 | 4.13e-01 | 100.0% | 71.5% |
| 3nyiB01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 40.0 | 4.45e-01 | 95.1% | 97.5% |
| 1rvkA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.54 | 48.0 | 4.36e-01 | 100.0% | 72.7% |
| 4mzyA02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 41.0 | 4.41e-01 | 88.7% | 94.0% |
| 1bqgA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.53 | 47.0 | 4.32e-01 | 100.0% | 73.1% |
| 4lypB00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 49.0 | 3.89e-01 | 100.0% | 83.9% |
| 1tqxA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 43.0 | 4.24e-01 | 85.7% | 81.4% |
| 4ovxA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.53 | 47.0 | 4.31e-01 | 100.0% | 72.6% |
| 3do6A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 49.0 | 4.23e-01 | 100.0% | 67.7% |
| 3a4lB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 40.0 | 4.27e-01 | 78.8% | 96.1% |
| 3ebvA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.53 | 48.0 | 4.28e-01 | 100.0% | 87.7% |
| 3cuxA01 | 3.20.20.360 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Malate synthase, domain 3 | 0.53 | 48.0 | 3.94e-01 | 100.0% | 67.6% |
| 6pwkA02 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.52 | 47.0 | 4.53e-01 | 97.0% | 96.5% |
| 3erpA01 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.52 | 47.0 | 4.15e-01 | 100.0% | 66.6% |
| 3wnkA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 46.0 | 3.84e-01 | 93.6% | 96.5% |
| 3bc9A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 48.0 | 4.25e-01 | 100.0% | 74.1% |
| 3bg3A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 48.0 | 4.11e-01 | 100.0% | 69.2% |
| 1nqkA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.52 | 45.0 | 3.75e-01 | 100.0% | 54.2% |
| 1cz1A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 48.0 | 3.83e-01 | 100.0% | 68.3% |
| 4xk2B00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.51 | 46.0 | 4.00e-01 | 100.0% | 64.1% |
| 3aptA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.51 | 47.0 | 4.18e-01 | 100.0% | 91.4% |
| 2oodA02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 47.0 | 4.01e-01 | 99.5% | 96.3% |
| 1p0kA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 45.0 | 3.96e-01 | 100.0% | 63.4% |
| 1b5tA00 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.51 | 47.0 | 4.23e-01 | 100.0% | 78.9% |
| 6fcxA01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.51 | 47.0 | 4.19e-01 | 100.0% | 93.2% |
| 2r6oA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.51 | 45.0 | 4.16e-01 | 96.1% | 88.4% |
ECOD (68)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060661 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.95 | 93.0 | 8.51e-01 | 100.0% | 88.0% |
| 3978226 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.92 | 90.0 | 7.83e-01 | 100.0% | 89.3% |
| 4995822 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.90 | 88.0 | 7.97e-01 | 100.0% | 91.4% |
| 4917768 | 2499.2.1.0 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 | 0.80 | 58.0 | 5.38e-01 | 73.4% | 89.3% |
| 4889794 | 2499.2.1.1 ↗ | a/b three-layered sandwiches › Subtilisin-like › Domain III of tail sheath protein Gp18 › Domain III of tail sheath protein Gp18 › Phage_sheath_1 | 0.79 | 57.0 | 5.55e-01 | 73.4% | 88.2% |
| 3268153 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.73 | 46.0 | 5.18e-01 | 79.3% | 81.3% |
| 4155839 | 2007.3.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains › Ligase_CoA | 0.70 | 47.0 | 5.47e-01 | 71.9% | 92.7% |
| 3535081 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.68 | 38.0 | 4.47e-01 | 85.7% | 77.9% |
| 3486923 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.68 | 49.0 | 5.49e-01 | 75.9% | 94.4% |
| 3249866 | 7585.1.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 | 0.67 | 37.0 | 4.41e-01 | 85.7% | 77.1% |
| 3479058 | 7585.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins | 0.66 | 37.0 | 4.50e-01 | 85.7% | 84.6% |
| 3742331 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.64 | 52.0 | 4.63e-01 | 84.7% | 92.9% |
| 4488523 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.63 | 51.0 | 4.57e-01 | 84.7% | 84.9% |
| 4952580 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.63 | 52.0 | 4.87e-01 | 85.2% | 97.1% |
| 3689167 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.63 | 51.0 | 4.40e-01 | 84.7% | 92.3% |
| 5066221 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.62 | 50.0 | 4.63e-01 | 84.7% | 89.6% |
| 4939281 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.61 | 46.0 | 5.04e-01 | 78.8% | 92.9% |
| 3412552 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.60 | 48.0 | 4.92e-01 | 100.0% | 88.4% |
| 4931922 | 2002.1.1.441 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RraA-like | 0.60 | 43.0 | 3.37e-01 | 100.0% | 35.2% |
| 4983888 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 47.0 | 4.07e-01 | 100.0% | 54.7% |
| 2625538 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.59 | 54.0 | 4.54e-01 | 98.5% | 99.1% |
| 5058422 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 41.0 | 3.77e-01 | 99.0% | 55.8% |
| 3241095 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.58 | 53.0 | 4.57e-01 | 98.5% | 96.5% |
| 5075879 | 2002.1.1.224 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › SPASM | 0.58 | 41.0 | 3.92e-01 | 99.0% | 62.4% |
| 4094424 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.58 | 53.0 | 4.68e-01 | 98.5% | 97.9% |
| 4587441 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.58 | 53.0 | 4.65e-01 | 99.5% | 95.7% |
| 4265789 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 44.0 | 4.48e-01 | 78.3% | 82.1% |
| 4305615 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.57 | 44.0 | 3.55e-01 | 78.3% | 46.1% |
| 3476062 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.57 | 53.0 | 4.42e-01 | 99.5% | 96.8% |
| 4451997 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 43.0 | 4.71e-01 | 78.8% | 94.1% |
| 4104978 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 43.0 | 4.56e-01 | 78.8% | 88.6% |
| 5013646 | 2004.1.1.67 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA | 0.57 | 43.0 | 4.03e-01 | 77.8% | 91.4% |
| 4594763 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.57 | 43.0 | 4.72e-01 | 78.8% | 98.2% |
| 4516442 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.56 | 43.0 | 4.73e-01 | 78.8% | 98.2% |
| 4995119 | 2004.1.1.67 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CbiA | 0.56 | 43.0 | 4.10e-01 | 77.3% | 99.1% |
| 5050328 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 44.0 | 3.81e-01 | 99.5% | 53.2% |
| 1169491 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.56 | 42.0 | 3.95e-01 | 100.0% | 62.7% |
| 5074581 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.56 | 45.0 | 4.07e-01 | 85.2% | 93.9% |
| 3194812 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.56 | 46.0 | 3.50e-01 | 85.7% | 76.9% |
| 4123352 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.56 | 42.0 | 4.52e-01 | 78.8% | 92.6% |
| 4100115 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.56 | 42.0 | 4.52e-01 | 78.3% | 92.0% |
| 3739616 | 2003.6.1.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin | 0.55 | 52.0 | 4.52e-01 | 99.5% | 98.3% |
| 4128825 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 44.0 | 3.75e-01 | 99.5% | 54.0% |
| 5004973 | 2004.1.1.175 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ParA | 0.54 | 46.0 | 4.50e-01 | 100.0% | 83.2% |
| 4945456 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 45.0 | 4.44e-01 | 100.0% | 82.7% |
| 3729588 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.53 | 45.0 | 3.77e-01 | 90.1% | 78.6% |
| 3483696 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 39.0 | 4.23e-01 | 89.7% | 90.6% |
| 4970981 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.53 | 45.0 | 4.35e-01 | 96.1% | 80.0% |
| 4142697 | 2002.1.1.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase | 0.53 | 43.0 | 4.09e-01 | 100.0% | 72.5% |
| 2554683 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.52 | 44.0 | 4.40e-01 | 100.0% | 86.7% |
| 3726418 | 2004.1.1.163 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 | 0.52 | 40.0 | 3.99e-01 | 79.3% | 97.2% |
| 5042766 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.52 | 44.0 | 4.07e-01 | 89.2% | 83.1% |
| 4997146 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 42.0 | 3.87e-01 | 85.2% | 87.8% |
| 4995167 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 46.0 | 4.39e-01 | 94.6% | 98.8% |
| 5013118 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 44.0 | 3.65e-01 | 90.1% | 86.3% |
| 4460822 | 2003.1.1.8 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › G6PD_N | 0.52 | 46.0 | 4.70e-01 | 94.6% | 98.5% |
| 4996947 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.52 | 47.0 | 3.93e-01 | 98.0% | 93.6% |
| 3038269 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.52 | 47.0 | 4.19e-01 | 100.0% | 85.5% |
| 3685848 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.51 | 47.0 | 3.92e-01 | 100.0% | 58.3% |
| 2893145 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.51 | 45.0 | 4.38e-01 | 100.0% | 86.3% |
| 5070450 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.51 | 47.0 | 4.05e-01 | 100.0% | 63.7% |
| 4631270 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 44.0 | 3.95e-01 | 91.1% | 97.8% |
| 3593278 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.51 | 47.0 | 3.91e-01 | 100.0% | 66.3% |
| 4962970 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.51 | 47.0 | 3.92e-01 | 100.0% | 64.1% |
| 4991264 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 43.0 | 3.69e-01 | 90.6% | 74.2% |
| 5024003 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.51 | 45.0 | 4.24e-01 | 98.0% | 80.3% |
| 3838532 | 327.9.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain | 0.50 | 46.0 | 3.55e-01 | 99.0% | 99.1% |
| 5052545 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.50 | 46.0 | 4.15e-01 | 100.0% | 97.9% |
D2
high
residues 89-178
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3lmlA03 | 2.60.40.4290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.84 | 73.0 | 7.48e-01 | 98.9% | 96.5% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.66 | 41.0 | 4.39e-01 | 72.2% | 72.4% |
| 1oxxK02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.64 | 30.0 | 4.03e-01 | 81.1% | 88.9% |
| 5fgoA00 | 3.10.450.700 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.61 | 37.0 | 4.31e-01 | 80.0% | 87.1% |
| 2ltrA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 42.0 | 4.01e-01 | 72.2% | 87.6% |
| 3j7yD01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 30.0 | 2.85e-01 | 80.0% | 38.7% |
| 3iujA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.59 | 45.0 | 3.06e-01 | 82.2% | 23.0% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 29.0 | 3.71e-01 | 81.1% | 91.1% |
| 2it1A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 33.0 | 3.78e-01 | 84.4% | 77.0% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 31.0 | 3.51e-01 | 82.2% | 67.2% |
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.57 | 31.0 | 3.00e-01 | 78.9% | 45.5% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.56 | 38.0 | 4.18e-01 | 83.3% | 85.1% |
| 4a18P00 | 3.30.720.90 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 34.0 | 3.90e-01 | 81.1% | 83.3% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.56 | 42.0 | 4.13e-01 | 88.9% | 74.0% |
| 4e5xG00 | 2.60.40.3530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 38.0 | 3.76e-01 | 72.2% | 81.8% |
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.55 | 41.0 | 3.72e-01 | 83.3% | 77.6% |
| 3fvqA03 | 2.40.50.470 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.55 | 26.0 | 3.08e-01 | 81.1% | 63.8% |
| 6mv2A01 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 38.0 | 3.70e-01 | 92.2% | 64.7% |
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 38.0 | 4.26e-01 | 98.9% | 100.0% |
| 3c4sA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 31.0 | 3.68e-01 | 94.4% | 87.7% |
| 3eb8B01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.52 | 30.0 | 3.45e-01 | 80.0% | 82.0% |
| 1kyfA01 | 2.60.40.1230 | Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain | 0.52 | 43.0 | 3.85e-01 | 94.4% | 94.8% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 39.0 | 3.46e-01 | 83.3% | 92.0% |
| 2bkkA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 38.0 | 3.89e-01 | 83.3% | 95.6% |
| 2rcqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.51 | 41.0 | 3.67e-01 | 93.3% | 95.0% |
| 3mx7A00 | 2.40.128.180 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 38.0 | 3.86e-01 | 83.3% | 100.0% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.50 | 43.0 | 4.16e-01 | 100.0% | 83.5% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957557 | 3629.1.1.0 ↗ | beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain | 0.89 | 86.0 | 7.88e-01 | 100.0% | 90.0% |
| 5060660 | 3629.1.1.0 ↗ | beta sandwiches › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain › Tail sheath protein beta-sandwich domain | 0.87 | 82.0 | 7.37e-01 | 100.0% | 94.2% |
| 136506 | 4075.1.1.2 ↗ | a+b complex topology › RGC domain › RGC domain › RGC domain › PF29130 | 0.62 | 54.0 | 5.27e-01 | 96.7% | 90.9% |
| 5023931 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 39.0 | 4.37e-01 | 86.7% | 82.9% |
| 4992039 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.61 | 31.0 | 3.41e-01 | 84.4% | 56.8% |
| 3287903 | 802.1.1.1 ↗ | a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom | 0.61 | 33.0 | 4.14e-01 | 77.8% | 94.0% |
| 4160601 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 44.0 | 4.02e-01 | 75.6% | 98.3% |
| 4932470 | 2.1.1.15 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon | 0.60 | 35.0 | 3.60e-01 | 80.0% | 57.8% |
| 3385864 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.59 | 33.0 | 3.87e-01 | 81.1% | 80.0% |
| 1075289 | 2.4.1.5 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › GlcV_C_terminal | 0.59 | 31.0 | 3.55e-01 | 81.1% | 68.8% |
| 5043569 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.59 | 33.0 | 3.17e-01 | 85.6% | 44.4% |
| 3370663 | 896.1.1.1 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e | 0.58 | 35.0 | 4.08e-01 | 83.3% | 89.8% |
| 3249582 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.58 | 38.0 | 4.16e-01 | 81.1% | 80.0% |
| 3606814 | 896.1.1.0 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related | 0.58 | 41.0 | 4.35e-01 | 84.4% | 84.6% |
| 4051997 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.57 | 32.0 | 2.98e-01 | 85.6% | 40.0% |
| 3650973 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.57 | 47.0 | 3.37e-01 | 93.3% | 91.4% |
| 5020098 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.57 | 31.0 | 3.44e-01 | 82.2% | 65.7% |
| 1406320 | 896.1.1.3 ↗ | a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 | 0.56 | 39.0 | 4.05e-01 | 84.4% | 76.8% |
| 4311788 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.55 | 34.0 | 3.21e-01 | 85.6% | 48.7% |
| 4187163 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.54 | 34.0 | 3.20e-01 | 85.6% | 49.6% |
| 4989691 | 2.4.1.7 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK | 0.54 | 32.0 | 2.90e-01 | 85.6% | 41.9% |
| 3385764 | 4954.1.1.0 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit | 0.54 | 38.0 | 4.15e-01 | 85.6% | 88.0% |
| 4228328 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.54 | 42.0 | 4.45e-01 | 88.9% | 98.8% |
| 4188283 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.53 | 39.0 | 4.13e-01 | 87.8% | 86.3% |
| 3387994 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.53 | 34.0 | 3.55e-01 | 84.4% | 71.2% |
| 4329624 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.53 | 34.0 | 3.23e-01 | 85.6% | 53.3% |
| 4268790 | 2.4.1.12 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal | 0.53 | 34.0 | 3.05e-01 | 85.6% | 43.8% |
| 3965386 | 2.4.1.6 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal | 0.53 | 33.0 | 3.03e-01 | 84.4% | 45.8% |
| 3947186 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.53 | 32.0 | 2.92e-01 | 84.4% | 43.3% |
| 4581970 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.53 | 35.0 | 3.07e-01 | 85.6% | 45.1% |
| 5001101 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.53 | 32.0 | 3.60e-01 | 78.9% | 88.3% |
| 5042834 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.52 | 40.0 | 3.42e-01 | 97.8% | 49.3% |
| 4497599 | 2.4.1.11 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 | 0.52 | 33.0 | 3.16e-01 | 85.6% | 53.3% |
| 4953898 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.52 | 33.0 | 3.04e-01 | 85.6% | 46.4% |
| 5014673 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.52 | 42.0 | 4.44e-01 | 97.8% | 100.0% |
| 3387114 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.52 | 34.0 | 3.43e-01 | 97.8% | 64.2% |
| 4995318 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.52 | 34.0 | 3.10e-01 | 85.6% | 49.6% |
| 4497266 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 33.0 | 3.10e-01 | 85.6% | 50.9% |
| 5015458 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.51 | 31.0 | 3.28e-01 | 96.7% | 67.5% |
| 3487462 | 9.1.1.0 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins | 0.51 | 45.0 | 4.00e-01 | 100.0% | 86.9% |
| 1567587 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.51 | 29.0 | 3.21e-01 | 85.6% | 69.0% |
| 3280978 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.50 | 32.0 | 3.56e-01 | 100.0% | 84.3% |
D3
medium
residues 364-441
Domain cluster:
rep: KX925554.1__APC46400.1__X__00138__D572-647
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hxlA05 | 3.30.360.90 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › | 0.87 | 62.0 | 6.60e-01 | 84.6% | 82.6% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 45.0 | 4.19e-01 | 84.6% | 50.5% |
| 5is2A01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.63 | 36.0 | 3.48e-01 | 76.9% | 47.3% |
| 3jwhA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 48.0 | 3.62e-01 | 82.1% | 100.0% |
| 1pu1A00 | 3.30.300.100 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like | 0.63 | 48.0 | 4.62e-01 | 84.6% | 71.4% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.60 | 47.0 | 3.61e-01 | 88.5% | 99.5% |
| 5ekaA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.58 | 33.0 | 3.25e-01 | 91.0% | 51.8% |
| 4i8qA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.57 | 43.0 | 2.92e-01 | 80.8% | 43.7% |
| 2vrqA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 38.0 | 3.25e-01 | 84.6% | 41.7% |
| 4eogA01 | 3.40.50.10640 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SSO1389-like | 0.55 | 39.0 | 2.67e-01 | 74.4% | 32.6% |
| 2iiiA00 | 3.60.90.10 | Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase | 0.54 | 39.0 | 3.42e-01 | 76.9% | 78.3% |
| 3v9oA00 | 3.30.1130.10 | Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain | 0.54 | 33.0 | 2.87e-01 | 76.9% | 38.8% |
| 4ubtD00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.54 | 38.0 | 2.44e-01 | 73.1% | 22.6% |
| 2q3fA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 38.0 | 2.93e-01 | 74.4% | 46.4% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.54 | 26.0 | 2.72e-01 | 71.8% | 46.4% |
| 3r64A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 39.0 | 2.73e-01 | 79.5% | 88.1% |
| 2xbtA00 | 2.60.40.710 | Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like | 0.53 | 37.0 | 2.98e-01 | 87.2% | 36.1% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.51 | 37.0 | 2.65e-01 | 76.9% | 41.7% |
| 4blqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 2.51e-01 | 74.4% | 38.6% |
| 3ge5A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 41.0 | 3.19e-01 | 88.5% | 40.9% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 39.0 | 2.59e-01 | 83.3% | 83.8% |
| 4k15A00 | 2.60.40.3860 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 36.0 | 3.06e-01 | 76.9% | 65.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957559 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.99 | 92.0 | 8.24e-01 | 94.9% | 74.0% |
| 2468539 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.85 | 79.0 | 6.82e-01 | 100.0% | 69.6% |
| 2471639 | 283.2.1.0 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like | 0.84 | 78.0 | 6.87e-01 | 100.0% | 72.1% |
| 4649106 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.64 | 49.0 | 3.77e-01 | 82.1% | 67.4% |
| 4000111 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.56 | 43.0 | 3.13e-01 | 83.3% | 45.8% |
| 3937002 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.54 | 43.0 | 2.90e-01 | 89.7% | 42.1% |
| 2907089 | 283.2.1.1 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 | 0.54 | 42.0 | 3.83e-01 | 89.7% | 61.6% |
| 4012036 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 39.0 | 2.93e-01 | 76.9% | 67.7% |
| 3809287 | 873.1.1.4 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › TRAPP | 0.53 | 38.0 | 2.95e-01 | 85.9% | 31.4% |
| 3491126 | 3382.1.1.1 ↗ | alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt | 0.53 | 42.0 | 2.90e-01 | 89.7% | 85.9% |
| 4555719 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.52 | 31.0 | 2.64e-01 | 78.2% | 32.9% |
| 3971859 | 3747.1.1.2 ↗ | a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bb_rod,Flg_bbr_C | 0.52 | 41.0 | 3.75e-01 | 88.5% | 63.6% |
| 4227892 | 2003.1.5.79 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23 | 0.51 | 40.0 | 2.91e-01 | 91.0% | 89.2% |
| 3190777 | 304.20.1.3 ↗ | a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › Nrap_D6 | 0.50 | 39.0 | 3.11e-01 | 87.2% | 55.4% |
| 3175102 | 2008.1.1.79 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Pet127 | 0.50 | 38.0 | 2.45e-01 | 80.8% | 98.9% |
| 3581413 | 11.1.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin | 0.50 | 37.0 | 3.17e-01 | 80.8% | 74.1% |