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IMGVR_UViG_3300028925_014195-3300028925-Ga0310698_11302475
Arc-VirIMGVR_UViG_3300028925_014195-3300028925-Ga0310698_11302475
Identity
- Kingdom:
- archaea
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-41
Domain cluster:
representative
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3dkqA01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.77 | 67.0 | 4.29e-01 | 100.0% | 22.0% |
| 1pqzA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 54.0 | 4.26e-01 | 100.0% | 55.4% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.68 | 55.0 | 3.70e-01 | 100.0% | 32.6% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 55.0 | 3.65e-01 | 100.0% | 33.1% |
| 2pndA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 55.0 | 4.03e-01 | 100.0% | 55.5% |
| 5cadA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 55.0 | 3.58e-01 | 100.0% | 30.6% |
| 7nitA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 54.0 | 4.00e-01 | 100.0% | 60.0% |
| 4dmiA02 | 2.60.120.1010 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 53.0 | 3.78e-01 | 100.0% | 41.6% |
| 1d0nA02 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.64 | 52.0 | 3.88e-01 | 97.5% | 34.5% |
| 5t89Y06 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 53.0 | 4.18e-01 | 100.0% | 62.0% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 52.0 | 3.48e-01 | 100.0% | 31.5% |
| 2cdoA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 52.0 | 3.74e-01 | 100.0% | 41.3% |
| 3kuzB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.62 | 50.0 | 3.80e-01 | 97.5% | 47.7% |
| 3webA00 | 2.60.40.770 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 49.0 | 3.60e-01 | 100.0% | 50.8% |
| 3t91B00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.60 | 46.0 | 3.05e-01 | 97.5% | 41.6% |
| 4n2kA01 | 2.60.40.1860 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain | 0.60 | 43.0 | 3.34e-01 | 100.0% | 29.4% |
| 7x4nE01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.59 | 47.0 | 2.88e-01 | 100.0% | 25.9% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 48.0 | 3.68e-01 | 100.0% | 54.8% |
| 3l9bA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.58 | 44.0 | 3.33e-01 | 95.0% | 100.0% |
| 2fqpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 46.0 | 3.71e-01 | 100.0% | 62.1% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.58 | 45.0 | 3.33e-01 | 100.0% | 62.3% |
| 4h32A02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.57 | 44.0 | 2.92e-01 | 100.0% | 65.0% |
| 2zbkA02 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.57 | 39.0 | 2.59e-01 | 80.0% | 41.6% |
| 2jjuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 3.58e-01 | 100.0% | 53.3% |
| 1uf2C02 | 2.60.120.170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 42.0 | 3.00e-01 | 100.0% | 24.2% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 44.0 | 3.14e-01 | 100.0% | 34.8% |
| 3d3oA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 47.0 | 3.13e-01 | 100.0% | 72.2% |
| 1sq2N00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 45.0 | 3.45e-01 | 100.0% | 49.1% |
| 1ca1A02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.56 | 44.0 | 3.34e-01 | 100.0% | 48.3% |
| 3tzgA00 | 2.40.160.150 | Mainly Beta › Beta Barrel › Porin › | 0.56 | 44.0 | 2.84e-01 | 95.0% | 98.3% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 42.0 | 3.33e-01 | 100.0% | 38.7% |
| 1adqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 3.41e-01 | 100.0% | 54.0% |
| 2m4vA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.55 | 40.0 | 3.39e-01 | 85.0% | 51.2% |
| 1wfjA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.55 | 41.0 | 3.12e-01 | 95.0% | 46.8% |
| 5jpnB04 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 3.21e-01 | 100.0% | 38.8% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.53 | 39.0 | 3.86e-01 | 97.5% | 98.0% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 38.0 | 3.18e-01 | 100.0% | 52.9% |
| 5wfiA01 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 41.0 | 3.06e-01 | 95.0% | 44.6% |
| 1wlfA01 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 40.0 | 3.36e-01 | 95.0% | 64.3% |
| 5uv6A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.29e-01 | 100.0% | 56.2% |
| 2g9gA00 | 2.60.120.1020 | Mainly Beta › Sandwich › Jelly Rolls › PAW domain | 0.51 | 39.0 | 2.69e-01 | 100.0% | 26.5% |
| 4mxwD00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 2.91e-01 | 95.0% | 98.5% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.50 | 36.0 | 2.47e-01 | 100.0% | 64.9% |
| 4ncdA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 2.94e-01 | 100.0% | 54.2% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039612 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.69 | 60.0 | 4.32e-01 | 100.0% | 50.8% |
| 4471982 | 4081.1.1.5 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N | 0.68 | 55.0 | 3.52e-01 | 100.0% | 23.0% |
| 4934612 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 57.0 | 4.14e-01 | 100.0% | 52.2% |
| 4295345 | 4178.1.1.0 ↗ | beta sandwiches › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain › Putative glucosidase YicI, C-terminal domain | 0.65 | 53.0 | 3.62e-01 | 92.5% | 32.9% |
| 3169542 | 11.1.1.806 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IgD2_Trs65 | 0.64 | 53.0 | 3.79e-01 | 100.0% | 43.7% |
| 3511027 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 52.0 | 3.75e-01 | 100.0% | 43.8% |
| 3808421 | 10.12.1.16 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 2OG-FeII_Oxy | 0.63 | 50.0 | 3.57e-01 | 100.0% | 43.4% |
| 3999221 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 50.0 | 3.88e-01 | 100.0% | 39.0% |
| 3420651 | 109.4.1.1521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif | 0.61 | 47.0 | 2.84e-01 | 92.5% | 27.6% |
| 3509988 | 73.1.1.0 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain | 0.61 | 47.0 | 3.66e-01 | 97.5% | 99.1% |
| 3651021 | 11.1.1.855 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 | 0.60 | 49.0 | 3.70e-01 | 97.5% | 51.8% |
| 3586331 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.60 | 49.0 | 3.10e-01 | 100.0% | 25.2% |
| 3928444 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 48.0 | 3.58e-01 | 97.5% | 34.8% |
| 3791212 | 11.1.1.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 | 0.59 | 46.0 | 3.35e-01 | 100.0% | 28.7% |
| 3768922 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.59 | 49.0 | 3.46e-01 | 100.0% | 39.3% |
| 3514837 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.58 | 47.0 | 3.59e-01 | 100.0% | 44.3% |
| 3318145 | 109.4.1.1521 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif | 0.58 | 45.0 | 2.82e-01 | 92.5% | 36.5% |
| 3682976 | 2007.1.4.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase | 0.58 | 46.0 | 3.11e-01 | 100.0% | 21.6% |
| 3607139 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.58 | 44.0 | 2.86e-01 | 100.0% | 20.0% |
| 4056161 | 11.1.1.923 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Smg8_Smg9 | 0.57 | 42.0 | 2.68e-01 | 85.0% | 25.9% |
| 1276875 | 210.2.1.2 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › SpoIIE | 0.57 | 43.0 | 2.88e-01 | 97.5% | 23.3% |
| 5025698 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 45.0 | 3.55e-01 | 100.0% | 52.4% |
| 3626657 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.57 | 43.0 | 3.42e-01 | 100.0% | 47.3% |
| 3670549 | 11.1.1.855 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26102 | 0.56 | 44.0 | 3.31e-01 | 97.5% | 45.6% |
| 5012965 | 6047.1.1.1 ↗ | beta barrels › N-terminal domain in DUF2118 family › N-terminal domain in DUF2118 family › N-terminal domain in DUF2118 family › DUF2118 | 0.55 | 44.0 | 3.55e-01 | 100.0% | 55.8% |
| 3785825 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.55 | 43.0 | 3.10e-01 | 95.0% | 87.6% |
| 3696190 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 41.0 | 3.17e-01 | 100.0% | 45.0% |
| 3236126 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.54 | 44.0 | 3.26e-01 | 100.0% | 43.2% |
| 3874568 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 41.0 | 3.24e-01 | 97.5% | 38.1% |
| 3363778 | 390.1.1.0 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like | 0.53 | 39.0 | 3.76e-01 | 95.0% | 74.5% |
| 3922295 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.53 | 39.0 | 3.24e-01 | 100.0% | 44.0% |
| 3519988 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 38.0 | 3.12e-01 | 100.0% | 41.8% |
| 4033809 | 10.32.1.260 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › YfhO | 0.51 | 36.0 | 2.88e-01 | 95.0% | 91.2% |
| 3225114 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 38.0 | 2.84e-01 | 100.0% | 66.0% |
| 3538722 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.51 | 38.0 | 3.14e-01 | 100.0% | 44.0% |
| 3677238 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 37.0 | 2.91e-01 | 100.0% | 60.8% |
| 4938088 | 4027.1.1.1 ↗ | beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › Topo_VI_alpha | 0.51 | 38.0 | 3.79e-01 | 95.0% | 80.0% |
| None | — | 0.51 | 38.0 | 2.16e-01 | 97.5% | 87.1% |