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IMGVR_UViG_3300028994_000010-3300028994-Ga0169583_10051927
Arc-VirIMGVR_UViG_3300028994_000010-3300028994-Ga0169583_10051927
Identity
- Kingdom:
- archaea
Quality
83.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-51
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4nbqB02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.58 | 38.0 | 3.25e-01 | 75.5% | 41.5% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.52 | 37.0 | 3.29e-01 | 79.6% | 49.4% |
D2
high
residues 76-182
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.85 | 40.0 | 3.85e-01 | 94.4% | 42.0% |
| 3u9jA00 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.65 | 39.0 | 3.46e-01 | 97.2% | 40.8% |
| 4nooB00 | 1.10.8.1160 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.65 | 35.0 | 3.76e-01 | 95.3% | 58.9% |
| 3gi7A00 | 1.20.1270.180 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.61 | 32.0 | 3.27e-01 | 96.3% | 51.5% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 37.0 | 3.21e-01 | 93.5% | 41.1% |
| 6d5xA00 | 1.20.1200.10 | Mainly Alpha › Up-down Bundle › Hypothetical Protein Ta1238; Chain: A; › Cobalamin adenosyltransferase-like | 0.57 | 48.0 | 4.30e-01 | 93.5% | 74.8% |
| 2e8gA01 | 1.20.1440.150 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.55 | 46.0 | 4.39e-01 | 88.8% | 99.2% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 47.0 | 4.17e-01 | 93.5% | 71.7% |
| 2jokA01 | 1.10.4120.10 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › SopE-like, GEF domain | 0.54 | 40.0 | 3.44e-01 | 77.6% | 84.0% |
| 1irlA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 40.0 | 3.73e-01 | 89.7% | 63.2% |
| 1ca1A01 | 1.10.575.10 | Mainly Alpha › Orthogonal Bundle › P1 Nuclease › P1 Nuclease | 0.52 | 38.0 | 2.97e-01 | 77.6% | 94.8% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 45.0 | 4.50e-01 | 96.3% | 91.1% |
| 1j77A00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.51 | 43.0 | 3.50e-01 | 93.5% | 49.2% |
| 3ukmA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.50 | 40.0 | 3.05e-01 | 98.1% | 36.1% |
| 3axjB01 | 1.20.58.190 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 | 0.50 | 37.0 | 3.29e-01 | 77.6% | 64.5% |
| 1qx1A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.50 | 42.0 | 2.94e-01 | 94.4% | 82.4% |
| 1siqA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.50 | 44.0 | 3.96e-01 | 100.0% | 92.9% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3520750 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.75 | 37.0 | 3.12e-01 | 99.1% | 29.1% |
| 3163932 | 601.4.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PilJ | 0.72 | 35.0 | 3.62e-01 | 93.5% | 47.6% |
| 3434311 | 611.2.1.2 ↗ | alpha bundles › N-cbl like › N-terminal domain of cbl (N-cbl) › N-terminal domain of cbl (N-cbl) › Rx_N | 0.66 | 39.0 | 3.68e-01 | 96.3% | 48.8% |
| 3967683 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.64 | 41.0 | 3.68e-01 | 100.0% | 46.7% |
| 3224843 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.64 | 38.0 | 3.57e-01 | 93.5% | 50.4% |
| 5050456 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.63 | 53.0 | 3.82e-01 | 90.7% | 84.9% |
| 3229891 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.61 | 41.0 | 3.74e-01 | 98.1% | 54.1% |
| 3888027 | 109.4.1.1635 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26779 | 0.59 | 39.0 | 3.40e-01 | 75.7% | 42.9% |
| 3694080 | 3758.1.1.0 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins | 0.58 | 52.0 | 3.65e-01 | 100.0% | 78.2% |
| 3616093 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.58 | 51.0 | 4.24e-01 | 97.2% | 88.4% |
| 3256510 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.57 | 31.0 | 3.46e-01 | 86.9% | 66.7% |
| 3649468 | 192.29.1.54 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BPS1 | 0.54 | 48.0 | 3.80e-01 | 100.0% | 68.5% |
| 3305747 | 192.2.1.18 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ING | 0.54 | 43.0 | 3.93e-01 | 100.0% | 63.6% |
| 3389416 | 140.1.1.0 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.54 | 38.0 | 3.96e-01 | 81.3% | 77.0% |
| 3704116 | 131.1.1.1 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › PDEase_I | 0.54 | 48.0 | 3.39e-01 | 99.1% | 73.9% |
| 3499418 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.54 | 40.0 | 3.75e-01 | 78.5% | 68.9% |
| 3224713 | 207.1.1.20 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4 | 0.54 | 39.0 | 2.39e-01 | 74.8% | 16.0% |
| 4123087 | 150.3.1.13 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › Leptin | 0.53 | 44.0 | 3.80e-01 | 87.9% | 60.0% |
| 3988434 | 633.2.1.0 ↗ | alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein | 0.53 | 45.0 | 4.59e-01 | 94.4% | 100.0% |
| 5014330 | 148.1.3.402 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook | 0.52 | 40.0 | 4.04e-01 | 100.0% | 78.2% |
| 3704691 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.52 | 38.0 | 3.24e-01 | 99.1% | 47.4% |
| 3586429 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.51 | 38.0 | 3.40e-01 | 78.5% | 63.9% |
| 3692742 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.51 | 43.0 | 3.96e-01 | 89.7% | 98.5% |
| 1108041 | 3763.1.1.0 ↗ | alpha bundles › protein of unknown function NP_951600.1 helical domain › protein of unknown function NP_951600.1 helical domain › protein of unknown function NP_951600.1 helical domain | 0.51 | 43.0 | 3.67e-01 | 96.3% | 95.7% |
| 2080122 | 601.4.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › PilJ | 0.50 | 34.0 | 3.44e-01 | 74.8% | 68.8% |
| 4012358 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.50 | 36.0 | 3.29e-01 | 74.8% | 80.7% |