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IMGVR_UViG_3300029026_000001-3300029026-Ga0169630_10005699
Arc-VirIMGVR_UViG_3300029026_000001-3300029026-Ga0169630_10005699
Identity
- Kingdom:
- archaea
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-72
Domain cluster:
representative
D2
high
residues 97-168
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2f22A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.76 | 57.0 | 4.49e-01 | 79.2% | 88.0% |
| 3k8pC01 | 1.20.58.1440 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.74 | 47.0 | 4.16e-01 | 87.5% | 44.8% |
| 4xhpA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.70 | 56.0 | 4.19e-01 | 86.1% | 82.2% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 59.0 | 5.14e-01 | 94.4% | 62.3% |
| 4cq4B00 | 6.10.340.10 | Special › Helix non-globular › hypothetical protein mp506/mpn330, domain 1 › | 0.67 | 40.0 | 3.56e-01 | 75.0% | 42.2% |
| 3dkaB01 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.67 | 50.0 | 4.09e-01 | 80.6% | 94.8% |
| 1kf6C00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.66 | 48.0 | 3.93e-01 | 76.4% | 42.3% |
| 1fxkB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 54.0 | 4.74e-01 | 95.8% | 59.6% |
| 3lphC00 | 6.10.140.630 | Special › Helix non-globular › Helix Hairpins › | 0.66 | 39.0 | 4.25e-01 | 81.9% | 72.4% |
| 4ijjB00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.65 | 48.0 | 3.90e-01 | 93.1% | 42.3% |
| 2zdiC00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 57.0 | 4.44e-01 | 95.8% | 60.8% |
| 2imjD01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.64 | 44.0 | 3.52e-01 | 72.2% | 74.6% |
| 2fsjA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.62 | 50.0 | 3.99e-01 | 87.5% | 73.9% |
| 3hwcA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 46.0 | 3.19e-01 | 79.2% | 62.4% |
| 2pfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.59 | 52.0 | 3.60e-01 | 100.0% | 86.3% |
| 4iduB01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.57 | 43.0 | 3.56e-01 | 80.6% | 62.2% |
| 6tqfA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.55 | 50.0 | 3.10e-01 | 100.0% | 88.0% |
| 4bgpA01 | 1.20.142.20 | Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › | 0.55 | 43.0 | 3.62e-01 | 86.1% | 64.6% |
| 5niiB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.55 | 42.0 | 3.19e-01 | 84.7% | 97.9% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 44.0 | 3.86e-01 | 86.1% | 60.2% |
| 5bkaE01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 38.0 | 3.20e-01 | 73.6% | 61.4% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.54 | 42.0 | 3.97e-01 | 83.3% | 83.9% |
| 4oxiA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.54 | 45.0 | 2.89e-01 | 100.0% | 95.5% |
| 1c20A00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.54 | 34.0 | 2.86e-01 | 86.1% | 35.2% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.53 | 37.0 | 3.17e-01 | 77.8% | 44.5% |
| 1dekA02 | 1.10.238.70 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.52 | 36.0 | 3.04e-01 | 72.2% | 96.7% |
| 5twbA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 40.0 | 2.89e-01 | 86.1% | 88.2% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3229643 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.72 | 61.0 | 5.10e-01 | 95.8% | 55.0% |
| 4588111 | 620.1.1.2 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB | 0.71 | 58.0 | 4.43e-01 | 87.5% | 86.9% |
| 3493963 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 60.0 | 5.29e-01 | 95.8% | 65.0% |
| 3787269 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.71 | 59.0 | 5.09e-01 | 95.8% | 59.1% |
| 3283069 | 620.1.1.5 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N | 0.70 | 55.0 | 4.30e-01 | 84.7% | 95.3% |
| 4214015 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.68 | 58.0 | 4.98e-01 | 91.7% | 61.8% |
| 3538408 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.68 | 61.0 | 5.51e-01 | 97.2% | 73.7% |
| 5060418 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.68 | 58.0 | 4.80e-01 | 95.8% | 55.0% |
| 4585740 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.67 | 54.0 | 4.96e-01 | 86.1% | 67.8% |
| 4962833 | 603.7.1.0 ↗ | alpha bundles › STAT-like › Ammonia monooxygenase subunit C › Ammonia monooxygenase subunit C | 0.67 | 54.0 | 4.00e-01 | 86.1% | 41.9% |
| 3392569 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.66 | 56.0 | 4.63e-01 | 91.7% | 57.6% |
| 3614763 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.66 | 54.0 | 4.57e-01 | 97.2% | 54.2% |
| 5051605 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.65 | 51.0 | 3.73e-01 | 84.7% | 66.8% |
| 4190838 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.65 | 54.0 | 4.81e-01 | 90.3% | 71.0% |
| 3691819 | 5050.1.1.14 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 | 0.64 | 56.0 | 3.98e-01 | 100.0% | 92.6% |
| 4954786 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.64 | 52.0 | 4.94e-01 | 93.1% | 76.5% |
| 4027404 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.63 | 54.0 | 4.87e-01 | 97.2% | 69.5% |
| 4983229 | 3896.1.1.0 ↗ | alpha duplicates or obligate multimers › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase-related › Intramembrane CDP-DAG synthetase | 0.63 | 50.0 | 3.57e-01 | 84.7% | 82.9% |
| None | — | 0.63 | 51.0 | 2.87e-01 | 88.9% | 11.4% | |
| 5059005 | 5068.1.1.0 ↗ | alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.62 | 48.0 | 3.74e-01 | 98.6% | 35.4% |
| 3680927 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.61 | 49.0 | 3.19e-01 | 100.0% | 19.8% |
| 3761667 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.61 | 42.0 | 4.10e-01 | 77.8% | 65.0% |
| 3925333 | 101.1.2.460 ↗ | alpha arrays › HTH › HTH › winged helix domain › WHD_DDX60 | 0.60 | 47.0 | 4.13e-01 | 86.1% | 60.9% |
| 4947926 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.60 | 47.0 | 3.36e-01 | 86.1% | 40.0% |
| 3213470 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.59 | 43.0 | 3.90e-01 | 95.8% | 56.0% |
| 3387004 | 3470.1.1.45 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF1440 | 0.59 | 44.0 | 3.34e-01 | 77.8% | 35.2% |
| 4588680 | 5068.1.1.0 ↗ | alpha bundles › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) › a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 0.57 | 50.0 | 3.82e-01 | 95.8% | 57.5% |
| 3523924 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.56 | 49.0 | 4.39e-01 | 95.8% | 76.0% |
| 3261517 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.56 | 49.0 | 3.80e-01 | 100.0% | 44.5% |
| 4027433 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.55 | 35.0 | 4.03e-01 | 70.8% | 94.0% |
| 3938199 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 48.0 | 3.62e-01 | 97.2% | 55.4% |
| 3332131 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.54 | 45.0 | 3.31e-01 | 95.8% | 35.6% |
| 3274079 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 46.0 | 3.06e-01 | 98.6% | 78.4% |
| 4365716 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.54 | 43.0 | 2.62e-01 | 87.5% | 97.9% |
| 3339208 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.54 | 47.0 | 3.28e-01 | 100.0% | 31.4% |
| 3783361 | 109.4.1.522 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RPAP1_C | 0.53 | 44.0 | 3.21e-01 | 91.7% | 60.0% |
| 3240388 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 46.0 | 3.10e-01 | 100.0% | 81.7% |
| 4244665 | 2004.1.1.1006 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF29246, PF29248 | 0.53 | 45.0 | 2.64e-01 | 97.2% | 17.8% |
| 3431805 | 5081.1.1.4 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › DUF1751 | 0.53 | 44.0 | 3.28e-01 | 100.0% | 36.1% |
| 5033390 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.53 | 45.0 | 3.56e-01 | 91.7% | 100.0% |