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IMGVR_UViG_3300029199_000032-3300029199-Ga0168647_10049017

Arc-Vir

IMGVR_UViG_3300029199_000032-3300029199-Ga0168647_10049017

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-47
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.75 47.0 4.20e-01 83.0% 45.5%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 52.0 4.74e-01 100.0% 58.1%
3gkeA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.71 59.0 4.30e-01 93.6% 48.5%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 53.0 4.94e-01 100.0% 63.9%
2zylA01 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.70 58.0 4.17e-01 93.6% 46.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 51.0 4.68e-01 100.0% 64.5%
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.66 50.0 3.79e-01 100.0% 33.9%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.43e-01 100.0% 68.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 45.0 2.61e-01 70.2% 9.0%
6cmzA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.64 40.0 3.02e-01 70.2% 24.4%
1zswA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 44.0 3.12e-01 74.5% 34.7%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 43.0 4.60e-01 74.5% 87.2%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 44.0 4.01e-01 74.5% 54.7%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 45.0 4.51e-01 78.7% 91.8%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 47.0 4.49e-01 100.0% 69.5%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.62 47.0 3.37e-01 83.0% 35.4%
1wgeA00 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.61 49.0 4.27e-01 100.0% 59.0%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.55e-01 95.7% 71.8%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 52.0 4.54e-01 95.7% 72.2%
3vcaA02 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.61 51.0 3.87e-01 97.9% 53.8%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.06e-01 100.0% 62.1%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 48.0 4.15e-01 89.4% 56.2%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 46.0 4.77e-01 95.7% 100.0%
2z3gB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 48.0 3.73e-01 100.0% 75.6%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.60 44.0 3.58e-01 83.0% 91.8%
7wffb01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 46.0 2.90e-01 93.6% 38.4%
1i07A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 38.0 3.55e-01 83.0% 50.8%
5owvD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 47.0 3.10e-01 100.0% 19.8%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 4.18e-01 100.0% 65.2%
1afcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 42.0 3.24e-01 83.0% 63.0%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 45.0 4.11e-01 100.0% 63.6%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.57 41.0 2.58e-01 78.7% 89.8%
1jmxA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 38.0 2.92e-01 70.2% 88.7%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 47.0 4.18e-01 95.7% 79.7%
2icsA01 2.30.40.10 Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 0.56 42.0 3.38e-01 85.1% 52.5%
4gyiA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 3.39e-01 83.0% 94.9%
2l6lA02 3.10.660.10 Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger 0.56 43.0 4.09e-01 100.0% 73.8%
2xnjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 46.0 3.69e-01 100.0% 88.5%
1lomA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.55 37.0 2.94e-01 70.2% 41.6%
6ks6G01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.55 38.0 2.40e-01 89.4% 13.1%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.54 38.0 3.15e-01 83.0% 90.7%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.54 45.0 3.86e-01 100.0% 87.8%
3oyyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 4.08e-01 100.0% 86.2%
2ch5B02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 44.0 3.00e-01 100.0% 72.5%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.50e-01 97.9% 67.3%
2uz8A01 3.40.30.90 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.52 36.0 3.61e-01 100.0% 70.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 35.0 3.29e-01 70.2% 53.0%
2fauA01 2.60.40.640 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 37.0 2.68e-01 78.7% 71.5%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.25e-01 100.0% 41.3%
3abbA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 41.0 2.51e-01 100.0% 94.5%
3udfA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.49e-01 97.9% 74.7%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 36.0 2.41e-01 80.9% 70.3%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 40.0 3.28e-01 97.9% 73.6%
4owkE00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.50 42.0 3.12e-01 100.0% 85.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3929809 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.79 55.0 5.83e-01 100.0% 85.0%
4616207 4.1.1.448 beta barrels › SH3 › SH3 › SH3 › DUF5372 0.78 50.0 4.98e-01 70.2% 62.0%
3931602 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.76 52.0 4.54e-01 74.5% 47.1%
4528717 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.76 57.0 5.04e-01 83.0% 75.4%
4968485 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.75 50.0 2.96e-01 70.2% 9.7%
3790904 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.74 55.0 5.12e-01 100.0% 63.3%
3917372 4.1.1.101 beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.74 51.0 4.44e-01 74.5% 57.3%
3786120 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.74 55.0 5.46e-01 100.0% 76.0%
4208181 4.1.1.70 beta barrels › SH3 › SH3 › SH3 › Tsr0524-like 0.73 50.0 4.50e-01 72.3% 52.3%
5081654 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.71 59.0 5.43e-01 91.5% 73.3%
4014812 4.8.1.2 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.71 54.0 5.00e-01 100.0% 65.0%
4641279 4294.1.1.1 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske 0.69 57.0 4.33e-01 93.6% 54.8%
4035796 66.1.1.1 beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.69 57.0 4.30e-01 93.6% 54.8%
4195627 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.69 55.0 5.01e-01 89.4% 75.4%
3933293 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 52.0 4.87e-01 100.0% 67.2%
4224041 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.67 50.0 4.36e-01 83.0% 68.0%
4034031 4056.1.1.0 beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.67 44.0 4.07e-01 70.2% 50.8%
5052790 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.66 44.0 3.10e-01 70.2% 24.0%
3483225 375.3.1.0 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.66 53.0 4.60e-01 100.0% 69.4%
4206920 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.65 50.0 4.43e-01 89.4% 70.7%
3657220 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.65 52.0 3.04e-01 89.4% 34.1%
3180626 4.8.1.36 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7141 0.65 51.0 5.09e-01 100.0% 82.0%
4547406 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.65 50.0 4.26e-01 87.2% 67.5%
4271974 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.65 51.0 4.58e-01 100.0% 62.5%
4678658 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.64 53.0 4.56e-01 95.7% 65.0%
4071917 4.1.1.111 beta barrels › SH3 › SH3 › SH3 › Tudor_RapA 0.63 43.0 4.25e-01 74.5% 68.0%
4339993 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 48.0 3.97e-01 87.2% 60.0%
4423306 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.63 48.0 4.20e-01 87.2% 66.7%
3574639 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.63 55.0 3.39e-01 100.0% 78.6%
4074279 4.6.1.6 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC_RimM 0.63 46.0 4.16e-01 83.0% 68.6%
3388362 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 51.0 2.87e-01 100.0% 70.1%
5061404 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 50.0 3.09e-01 97.9% 52.5%
5081569 1.1.9.1 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA 0.61 47.0 3.79e-01 89.4% 99.0%
3839369 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.61 45.0 3.98e-01 87.2% 68.8%
5053250 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 45.0 4.11e-01 83.0% 76.9%
3289062 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 48.0 3.99e-01 93.6% 53.3%
3377905 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.60 47.0 3.08e-01 89.4% 62.7%
3974266 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.60 42.0 2.91e-01 76.6% 58.8%
3945142 252.2.1.7 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › PF30395 0.59 45.0 4.51e-01 89.4% 100.0%
3960168 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.59 43.0 4.27e-01 97.9% 78.0%
3231308 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 42.0 2.81e-01 100.0% 17.3%
5000121 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 43.0 4.60e-01 80.9% 97.5%
4958558 243.6.1.0 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.58 44.0 3.63e-01 85.1% 66.7%
3190147 149.1.1.1 alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 0.57 46.0 2.66e-01 93.6% 14.9%
4544501 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.57 39.0 3.95e-01 100.0% 72.0%
5031165 4.1.1.93 beta barrels › SH3 › SH3 › SH3 › 40S_S4_C 0.57 49.0 4.31e-01 95.7% 68.6%
2855566 223.1.1.51 a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.57 47.0 3.28e-01 100.0% 57.8%
1678591 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.57 38.0 3.71e-01 70.2% 62.3%
4027091 375.3.1.2 few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-CSL 0.57 44.0 4.31e-01 100.0% 83.6%
3260957 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.56 48.0 3.53e-01 97.9% 93.1%
3515117 2004.1.1.73 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 0.56 43.0 2.91e-01 89.4% 69.5%
3926167 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.55 37.0 2.35e-01 72.3% 46.9%
4054678 601.51.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-helical domain in phase 1 flagellin › alpha-helical domain in phase 1 flagellin 0.54 45.0 2.70e-01 100.0% 33.5%
3587130 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 38.0 3.42e-01 78.7% 62.9%
5023580 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 42.0 3.84e-01 100.0% 66.2%
3866885 922.1.1.7 few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_ADAMTS 0.53 36.0 3.29e-01 70.2% 69.2%
3177048 719.2.1.0 beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like 0.52 37.0 3.20e-01 85.1% 94.7%
3621074 109.4.1.353 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_N 0.52 41.0 2.35e-01 93.6% 15.4%
3738506 4325.1.1.4 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DIPSY 0.51 38.0 3.94e-01 87.2% 100.0%
2389420 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 2.59e-01 93.6% 29.7%
4014548 705.1.1.1 beta duplicates or obligate multimers › Cyanovirin-N › Cyanovirin-N › Cyanovirin-N › CVNH 0.50 37.0 3.07e-01 85.1% 90.0%