←Back to structures

IMGVR_UViG_3300029202_000132-3300029202-Ga0167843_10061917

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300029202_000132-3300029202-Ga0167843_10061917 ↗
Kingdom:: archaea

Quality

84.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 122-194

PDB

Domain cluster: rep: IMGVR_UViG_3300043112_000061-3300043112-Ga0484783_004407_514_1071__D114-177

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3nv6A00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.61	46.0	2.88e-01	79.5%	38.9%
3flkA00	3.40.718.10	Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase	0.57	47.0	3.09e-01	94.5%	90.0%
1l5xA00	3.40.1210.10	Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase	0.55	42.0	2.83e-01	82.2%	57.5%
3wndA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.54	41.0	3.20e-01	83.6%	93.0%
3ihvA03	1.25.40.900	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	47.0	3.84e-01	100.0%	79.9%
3boqA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	43.0	3.55e-01	90.4%	80.7%
4qt4A00	3.40.50.1470	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase	0.53	38.0	2.84e-01	76.7%	91.5%
1yhlA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	44.0	2.84e-01	97.3%	53.0%
6jh7B00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.51	43.0	3.02e-01	95.9%	67.6%
3gs3A00	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.51	42.0	2.93e-01	91.8%	39.8%

ECOD (11)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3681680	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.62	45.0	3.47e-01	76.7%	47.6%
4071658	2004.1.1.73 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1	0.58	43.0	3.32e-01	82.2%	99.4%
4661498	109.26.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C	0.58	40.0	3.23e-01	86.3%	36.6%
137226	2003.1.5.201 ↗	a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25, Methyltransf_31	0.55	49.0	3.38e-01	100.0%	89.0%
4510171	5001.1.1.1 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1	0.54	47.0	3.10e-01	100.0%	53.5%
3334545	7512.1.1.0 ↗	a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase	0.54	46.0	3.22e-01	97.3%	47.3%
3506749	633.21.1.23 ↗	alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20	0.53	46.0	3.61e-01	100.0%	84.8%
3930358	1081.1.1.1 ↗	alpha arrays › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › hDGE_amylase	0.52	45.0	3.44e-01	97.3%	84.0%
3400779	7579.1.1.2 ↗	a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase	0.51	43.0	2.87e-01	95.9%	51.7%
3715067	193.1.1.0 ↗	alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like	0.50	43.0	3.58e-01	98.6%	81.5%
3503876	101.1.2.381 ↗	alpha arrays › HTH › HTH › winged helix domain › UBR1-like_wing	0.50	39.0	3.51e-01	83.6%	93.0%

D2 medium residues 9-115

PDB

Domain cluster: representative

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2hxiA01	1.10.10.60	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like	0.67	38.0	4.76e-01	92.5%	93.8%
1on2A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.56	36.0	4.16e-01	88.8%	94.4%
6oinA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	33.0	3.90e-01	82.2%	92.5%
1stzA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.53	36.0	3.96e-01	93.5%	87.1%
4yn3A01	3.40.50.200	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain	0.52	42.0	2.99e-01	88.8%	88.5%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5081163	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.78	41.0	5.52e-01	89.7%	100.0%
3826537	376.1.2.0 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain	0.60	31.0	4.02e-01	86.9%	92.7%
3995522	376.1.2.1 ↗	few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_1	0.55	29.0	3.57e-01	73.8%	86.7%
4977846	101.21.1.1 ↗	alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N	0.51	30.0	2.82e-01	89.7%	46.2%