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IMGVR_UViG_3300029202_000132-3300029202-Ga0167843_1006198
Arc-VirIMGVR_UViG_3300029202_000132-3300029202-Ga0167843_1006198
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 23-168
Domain cluster:
rep: OQ067477.1__WCD44189.1__Lumi_050__00050__D65-227
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.72 | 38.0 | 5.14e-01 | 93.8% | 100.0% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.61 | 18.0 | 3.03e-01 | 88.4% | 72.9% |
| 1pfsA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 31.0 | 4.06e-01 | 89.7% | 100.0% |
| 3nqiA01 | 2.40.50.500 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain | 0.56 | 27.0 | 3.73e-01 | 91.8% | 98.5% |
| 3nqzA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 25.0 | 3.12e-01 | 91.1% | 70.2% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.52 | 27.0 | 3.54e-01 | 82.2% | 94.7% |
| 3fhwA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 34.0 | 4.04e-01 | 95.9% | 99.0% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002173 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.76 | 47.0 | 5.82e-01 | 97.9% | 100.0% |
| 5021275 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.70 | 51.0 | 5.80e-01 | 96.6% | 100.0% |
| 5068234 | 259.1.1.0 ↗ | a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain | 0.54 | 33.0 | 4.08e-01 | 93.8% | 100.0% |
| 5055030 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 40.0 | 4.14e-01 | 95.9% | 83.6% |
| 3680043 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 38.0 | 4.11e-01 | 84.2% | 90.0% |
| 4939419 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.52 | 27.0 | 3.34e-01 | 87.0% | 82.4% |
D2
high
residues 175-223
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d3yA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 68.0 | 6.05e-01 | 100.0% | 70.4% |
| 1ashA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.70 | 49.0 | 3.53e-01 | 75.5% | 25.9% |
| 4eqqA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 52.0 | 5.27e-01 | 100.0% | 93.8% |
| 4u7bA01 | 1.10.10.1450 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 50.0 | 4.96e-01 | 100.0% | 84.3% |
| 6pw7A01 | 1.10.238.180 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.65 | 45.0 | 3.91e-01 | 73.5% | 88.0% |
| 4etsA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 49.0 | 4.30e-01 | 100.0% | 54.0% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 46.0 | 3.79e-01 | 100.0% | 40.8% |
| 5dukB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 4.35e-01 | 100.0% | 62.7% |
| 3cf6E01 | 1.10.8.1240 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.62 | 45.0 | 4.69e-01 | 81.6% | 97.8% |
| 3w6zA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 49.0 | 3.85e-01 | 100.0% | 39.7% |
| 6d2qA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.60 | 47.0 | 3.83e-01 | 100.0% | 43.3% |
| 2x49A03 | 1.10.8.540 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 | 0.60 | 45.0 | 3.71e-01 | 81.6% | 72.2% |
| 1r3dA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.58 | 45.0 | 2.98e-01 | 95.9% | 58.8% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 40.0 | 3.31e-01 | 77.6% | 69.9% |
| 6b8hO01 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.57 | 44.0 | 3.78e-01 | 100.0% | 65.7% |
| 2xmoA02 | 1.10.246.180 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.55 | 46.0 | 3.85e-01 | 95.9% | 61.6% |
| 4efcA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.54 | 44.0 | 4.20e-01 | 100.0% | 83.6% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.50 | 40.0 | 2.71e-01 | 91.8% | 61.4% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2913 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.78 | 68.0 | 6.05e-01 | 100.0% | 70.4% |
| 3603961 | 101.21.1.1 ↗ | alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N | 0.77 | 66.0 | 4.90e-01 | 100.0% | 37.7% |
| 4988334 | 101.1.2.913 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Lhr | 0.76 | 61.0 | 5.06e-01 | 100.0% | 50.0% |
| 3275225 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 64.0 | 5.62e-01 | 100.0% | 65.3% |
| 5067342 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.74 | 58.0 | 4.90e-01 | 100.0% | 50.0% |
| 4126690 | 101.35.1.4 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 | 0.72 | 59.0 | 5.74e-01 | 100.0% | 83.6% |
| 5000306 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 58.0 | 5.06e-01 | 100.0% | 63.5% |
| 3905735 | 101.1.2.94 ↗ | alpha arrays › HTH › HTH › winged helix domain › ANAPC2 | 0.72 | 59.0 | 5.11e-01 | 100.0% | 63.5% |
| 4983598 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 58.0 | 5.40e-01 | 100.0% | 72.3% |
| 5005152 | 101.1.1.554 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_61 | 0.71 | 61.0 | 5.88e-01 | 98.0% | 90.9% |
| 3170895 | 2004.1.3.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.71 | 59.0 | 3.83e-01 | 100.0% | 20.0% |
| 4979555 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.71 | 57.0 | 5.48e-01 | 100.0% | 80.0% |
| 4337422 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.71 | 59.0 | 4.21e-01 | 100.0% | 29.9% |
| 4678981 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 54.0 | 5.43e-01 | 100.0% | 90.0% |
| 5042403 | 101.1.2.913 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Lhr | 0.69 | 55.0 | 4.25e-01 | 100.0% | 36.3% |
| 1169399 | 101.35.1.2 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp | 0.69 | 55.0 | 5.42e-01 | 100.0% | 86.5% |
| 4932302 | 101.1.2.913 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Lhr | 0.69 | 54.0 | 4.88e-01 | 100.0% | 61.3% |
| 4997786 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 55.0 | 4.82e-01 | 100.0% | 60.0% |
| 3247201 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.68 | 53.0 | 5.32e-01 | 100.0% | 90.0% |
| 4605066 | 101.1.1.51 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Slx4 | 0.66 | 55.0 | 4.67e-01 | 100.0% | 59.1% |
| 4504557 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 54.0 | 5.29e-01 | 100.0% | 92.7% |
| 3781058 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 54.0 | 5.27e-01 | 100.0% | 92.7% |
| 2324032 | 4974.1.1.0 ↗ | alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain | 0.65 | 45.0 | 3.05e-01 | 75.5% | 78.8% |
| 5002459 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 55.0 | 4.84e-01 | 100.0% | 66.7% |
| 5075915 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 51.0 | 4.52e-01 | 100.0% | 60.0% |
| 4993671 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 50.0 | 4.42e-01 | 100.0% | 54.4% |
| 3261117 | 633.24.1.2 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › DUF5601 | 0.63 | 51.0 | 4.31e-01 | 100.0% | 74.7% |
| 3443787 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 49.0 | 4.36e-01 | 100.0% | 57.6% |
| 3782517 | 7515.1.1.6 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest | 0.62 | 42.0 | 2.50e-01 | 71.4% | 11.1% |
| 3330562 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 47.0 | 4.30e-01 | 100.0% | 61.3% |
| 5053286 | 247.1.1.0 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase | 0.61 | 51.0 | 3.16e-01 | 100.0% | 17.6% |
| 3356117 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.57 | 45.0 | 2.88e-01 | 100.0% | 17.4% |
| 4429159 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.56 | 47.0 | 2.82e-01 | 98.0% | 34.3% |
| 3668968 | 148.1.1.3 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Histone,Histone_H2A_C | 0.55 | 44.0 | 3.23e-01 | 95.9% | 31.0% |