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IMGVR_UViG_3300029202_000229-3300029202-Ga0167843_1003591

Arc-Vir

IMGVR_UViG_3300029202_000229-3300029202-Ga0167843_1003591

Identity

Kingdom:
archaea

Quality

75.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-66
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yfbC02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.63 41.0 3.89e-01 78.8% 56.4%
1fm2B03 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.59 37.0 3.80e-01 77.3% 63.6%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.57 41.0 2.57e-01 77.3% 57.5%
1dw9A02 3.30.1160.10 Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain 0.54 35.0 3.49e-01 81.8% 63.2%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.54 39.0 2.35e-01 77.3% 46.5%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.54 40.0 3.83e-01 80.3% 79.2%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.53 39.0 3.18e-01 84.8% 93.2%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.52 42.0 2.80e-01 93.9% 86.4%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.50 40.0 3.46e-01 92.4% 54.9%
1pu1A00 3.30.300.100 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › MTH677-like 0.50 33.0 3.06e-01 95.5% 49.5%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4137758 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.72 39.0 4.43e-01 78.8% 70.0%
3639274 261.1.1.1 ↗ a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.67 41.0 2.45e-01 74.2% 7.9%
3633492 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.62 48.0 2.92e-01 84.8% 56.9%
3778175 5052.1.1.1 ↗ alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF 0.61 38.0 2.30e-01 71.2% 9.1%
4954462 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.60 41.0 2.56e-01 71.2% 28.4%
3185221 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.59 43.0 2.62e-01 78.8% 21.7%
3454218 109.4.1.890 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_CNRKL1_C 0.59 46.0 3.26e-01 86.4% 56.3%
5041736 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 39.0 3.85e-01 89.4% 62.7%
4941505 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.58 43.0 4.33e-01 78.8% 78.5%
3249830 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.58 47.0 3.79e-01 87.9% 97.6%
4241225 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.56 47.0 3.11e-01 98.5% 95.6%
3700769 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.56 42.0 3.68e-01 90.9% 52.4%
3568883 243.3.1.27 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Dynactin_p62 0.55 39.0 3.35e-01 72.7% 58.7%
1824189 327.6.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › Germane 0.55 39.0 3.01e-01 72.7% 93.3%
3664751 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.55 41.0 3.65e-01 93.9% 54.0%
3852918 4290.1.1.8 ↗ alpha duplicates or obligate multimers › HP0242-like › HP0242-like › HP0242-like › Dynactin_p62 0.55 38.0 3.79e-01 74.2% 88.4%
4145438 3747.1.1.3 ↗ a+b two layers › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flagellar hook protein FlgE D0 domain › Flg_bbr_C 0.54 43.0 3.79e-01 87.9% 58.0%
3280088 223.1.1.17 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › ScfRs 0.54 35.0 3.13e-01 75.8% 44.0%
3810414 812.2.1.1 ↗ a+b duplicates or obligate multimers › MinE-like › Cyanase C-terminal domain › Cyanase C-terminal domain › Cyanate_lyase 0.54 35.0 3.29e-01 81.8% 53.8%
3903880 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.54 40.0 2.48e-01 83.3% 86.0%
3737341 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 39.0 3.11e-01 77.3% 39.2%
3752543 7.1.1.17 ↗ beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ, PDZ_6 0.53 37.0 3.15e-01 87.9% 43.6%
3104378 101.17.1.3 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › HU-CCDC81_euk_1 0.53 36.0 3.36e-01 71.2% 66.7%
3634241 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 37.0 3.51e-01 74.2% 62.5%
3910623 385.1.1.11 ↗ few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › IL17 0.52 39.0 3.43e-01 81.8% 85.7%
4923851 224.1.1.2 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Gelsolin 0.52 34.0 2.65e-01 83.3% 28.2%
3636298 5001.1.1.6 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.52 43.0 2.90e-01 90.9% 82.1%
3815772 109.4.1.1580 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N, HAT_PRP39_N, HAT_PRP39_C 0.51 40.0 2.28e-01 83.3% 8.7%
3455842 810.1.1.2 ↗ a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › GGACT 0.51 40.0 3.40e-01 87.9% 84.3%
3932330 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.51 39.0 3.26e-01 83.3% 67.0%
3947849 3609.1.1.4 ↗ alpha arrays › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › DNA repair protein RAD4 beta-hairpin domain › ArdcN 0.50 37.0 3.39e-01 80.3% 79.8%