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IMGVR_UViG_3300029221_000043-3300029221-Ga0168075_10384911
Arc-VirIMGVR_UViG_3300029221_000043-3300029221-Ga0168075_10384911
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-123
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nrwA00 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.81 | 73.0 | 6.78e-01 | 98.8% | 95.2% |
| 2kobA01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.76 | 69.0 | 6.72e-01 | 100.0% | 98.9% |
| 2a3vB01 | 1.10.150.130 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain | 0.76 | 68.0 | 6.52e-01 | 96.4% | 93.6% |
| 5z7cA01 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.61 | 52.0 | 4.19e-01 | 97.6% | 79.0% |
| 1zp2A01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.61 | 46.0 | 4.20e-01 | 86.9% | 60.0% |
| 2lvfA00 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.60 | 43.0 | 3.92e-01 | 76.2% | 81.6% |
| 3b0xA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.58 | 45.0 | 4.48e-01 | 86.9% | 95.4% |
| 2e9fB01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.57 | 44.0 | 4.26e-01 | 85.7% | 84.4% |
| 1yfmA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.53 | 41.0 | 3.68e-01 | 85.7% | 67.5% |
| 1wn0A00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.53 | 37.0 | 3.22e-01 | 81.0% | 46.6% |
| 3c8tA01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.53 | 41.0 | 3.95e-01 | 85.7% | 79.4% |
| 2wj9B00 | 3.30.70.3580 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Antirestriction protein | 0.52 | 45.0 | 3.86e-01 | 100.0% | 90.3% |
| 4z7fB00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.52 | 46.0 | 3.72e-01 | 100.0% | 66.1% |
| 6p73A02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 42.0 | 3.55e-01 | 88.1% | 62.9% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 42.0 | 3.52e-01 | 88.1% | 63.6% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028565 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.78 | 69.0 | 6.72e-01 | 95.2% | 93.3% |
| 5058464 | 186.1.1.4 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 | 0.74 | 63.0 | 6.44e-01 | 97.6% | 95.0% |
| 4453655 | 131.1.1.13 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_5 | 0.70 | 58.0 | 4.42e-01 | 90.5% | 76.9% |
| 3941995 | 131.1.1.13 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_5 | 0.66 | 56.0 | 4.25e-01 | 94.0% | 75.5% |
| 3484242 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.65 | 51.0 | 3.74e-01 | 85.7% | 35.5% |
| 4075843 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.64 | 45.0 | 4.21e-01 | 72.6% | 83.7% |
| 4929245 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.59 | 45.0 | 4.81e-01 | 83.3% | 100.0% |
| 2724222 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.59 | 47.0 | 3.85e-01 | 92.9% | 45.7% |
| 3597528 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 45.0 | 3.39e-01 | 83.3% | 48.8% |
| 3620215 | 101.1.1.35 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_psq | 0.58 | 45.0 | 3.59e-01 | 95.2% | 38.4% |
| 3318084 | 109.4.1.1269 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif | 0.58 | 36.0 | 2.54e-01 | 97.6% | 19.4% |
| 4983736 | 4952.1.1.0 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like | 0.58 | 43.0 | 4.18e-01 | 81.0% | 81.1% |
| 3963132 | 2007.1.2.49 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › TfuA | 0.58 | 42.0 | 3.19e-01 | 86.9% | 30.7% |
| 3578718 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.57 | 45.0 | 4.35e-01 | 86.9% | 82.1% |
| 4938609 | 4952.1.1.1 ↗ | alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_1 | 0.54 | 43.0 | 3.59e-01 | 89.3% | 65.2% |
| 5076381 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.54 | 46.0 | 4.38e-01 | 96.4% | 84.0% |
| 5035132 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.51 | 38.0 | 3.53e-01 | 88.1% | 59.6% |
D2
high
residues 140-296
Domain cluster:
rep: IMGVR_UViG_3300014911_000466-3300014911-Ga0180301_1000081927__D265-432
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16795.11 best | Phage_integr_3 | 87.8 | 1.10e-24 | 96.8% | 87.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3uxuA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.84 | 79.0 | 7.91e-01 | 99.4% | 96.9% |
| 4a8eA02 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.77 | 72.0 | 6.91e-01 | 100.0% | 93.9% |
| 1aihA00 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.75 | 60.0 | 5.82e-01 | 82.2% | 79.4% |
| 3mklA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.64 | 34.0 | 4.10e-01 | 77.1% | 77.9% |
| 1vqzA02 | 3.30.390.50 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain | 0.52 | 27.0 | 3.45e-01 | 77.1% | 86.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041911 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.92 | 88.0 | 8.69e-01 | 99.4% | 95.8% |
| 150341 | 101.1.8.8 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integr_3 | 0.84 | 80.0 | 7.95e-01 | 100.0% | 96.9% |
| 5073434 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.82 | 76.0 | 6.94e-01 | 98.1% | 97.5% |
| 4992939 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 74.0 | 7.21e-01 | 96.8% | 98.2% |
| 4965640 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.80 | 72.0 | 6.29e-01 | 96.2% | 94.3% |
| 5008693 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.79 | 73.0 | 6.60e-01 | 100.0% | 95.7% |
| 4997941 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 72.0 | 6.47e-01 | 97.5% | 94.3% |
| 4999495 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.78 | 73.0 | 6.94e-01 | 98.7% | 98.3% |
| 3676541 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 33.0 | 3.76e-01 | 70.1% | 77.9% |
| 3261978 | 244.3.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › Lip_prot_lig_C | 0.52 | 24.0 | 3.46e-01 | 72.6% | 100.0% |