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IMGVR_UViG_3300029249_000062-3300029249-Ga0168690_100271517
Arc-VirIMGVR_UViG_3300029249_000062-3300029249-Ga0168690_100271517
Identity
- Kingdom:
- archaea
Quality
78.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-69
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.84 | 49.0 | 5.23e-01 | 100.0% | 66.7% |
| 2rtsA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.82 | 49.0 | 4.50e-01 | 100.0% | 47.9% |
| 3prbA02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.71 | 37.0 | 4.19e-01 | 100.0% | 65.9% |
| 1souA00 | 3.40.50.10420 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like | 0.56 | 41.0 | 2.95e-01 | 82.8% | 40.2% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.55 | 37.0 | 3.19e-01 | 100.0% | 44.6% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4444075 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.89 | 51.0 | 5.96e-01 | 100.0% | 79.1% |
| 3464207 | 377.2.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › Fpg-like_C | 0.60 | 28.0 | 3.36e-01 | 70.7% | 60.0% |
D2
medium
residues 86-116
Domain cluster:
representative
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xmtA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.72 | 55.0 | 4.06e-01 | 90.3% | 41.1% |
| 2jh3A03 | 3.30.1360.190 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.72 | 51.0 | 3.57e-01 | 80.6% | 61.6% |
| 2hq4A00 | 3.40.1600.10 | Alpha Beta › 3-Layer(aba) Sandwich › PH1570-like fold › PH1570-like | 0.70 | 53.0 | 3.44e-01 | 93.5% | 17.7% |
| 2v1lA00 | 3.10.450.430 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF2787 | 0.70 | 55.0 | 3.81e-01 | 100.0% | 46.5% |
| 3ii7A00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.69 | 51.0 | 3.05e-01 | 93.5% | 28.5% |
| 1ei5A02 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.69 | 54.0 | 4.23e-01 | 100.0% | 41.5% |
| 1yw6B00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.67 | 51.0 | 2.97e-01 | 90.3% | 22.2% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.67 | 46.0 | 3.38e-01 | 77.4% | 63.3% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.67 | 50.0 | 3.72e-01 | 93.5% | 36.2% |
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.66 | 51.0 | 3.25e-01 | 93.5% | 60.2% |
| 3q9vA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 47.0 | 3.40e-01 | 87.1% | 25.5% |
| 2a90A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.65 | 46.0 | 3.42e-01 | 80.6% | 33.7% |
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.64 | 46.0 | 3.51e-01 | 100.0% | 38.2% |
| 3zq7A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 48.0 | 3.44e-01 | 90.3% | 26.7% |
| 2z0zA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.62 | 46.0 | 2.99e-01 | 100.0% | 47.4% |
| 1ztpA01 | 3.30.760.10 | Alpha Beta › 2-Layer Sandwich › RNA Cap, Translation Initiation Factor Eif4e › RNA Cap, Translation Initiation Factor Eif4e | 0.62 | 49.0 | 3.04e-01 | 96.8% | 54.2% |
| 4uhtA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 3.39e-01 | 93.5% | 72.5% |
| 7sz2A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.60 | 44.0 | 3.38e-01 | 90.3% | 34.8% |
| 7qs4A01 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.60 | 47.0 | 2.95e-01 | 90.3% | 50.8% |
| 2k4jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 43.0 | 3.21e-01 | 90.3% | 26.7% |
| 2pmuC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 45.0 | 3.38e-01 | 96.8% | 28.3% |
| 2m1bA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 41.0 | 2.99e-01 | 90.3% | 22.4% |
| 2chnB04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 47.0 | 3.98e-01 | 100.0% | 56.7% |
| 1ej6A04 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.59 | 44.0 | 2.70e-01 | 87.1% | 11.7% |
| 2mlkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 41.0 | 2.92e-01 | 77.4% | 19.1% |
| 1dg6A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 41.0 | 2.80e-01 | 87.1% | 69.1% |
| 1kgsA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.22e-01 | 100.0% | 29.6% |
| 1pn2B01 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.57 | 39.0 | 2.59e-01 | 71.0% | 50.0% |
| 2m87A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 2.99e-01 | 90.3% | 25.2% |
| 1l5jA02 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.56 | 46.0 | 2.89e-01 | 90.3% | 82.5% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.56 | 43.0 | 3.39e-01 | 96.8% | 45.8% |
| 2yyoA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.56 | 43.0 | 2.89e-01 | 100.0% | 46.3% |
| 2i50A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 44.0 | 3.09e-01 | 96.8% | 66.4% |
| 1kxgA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 40.0 | 2.75e-01 | 87.1% | 64.6% |
| 1g5gA03 | 2.60.40.1690 | Mainly Beta › Sandwich › Immunoglobulin-like › Head and neck region of the ectodomain of NDV fusion glycoprotein | 0.54 | 39.0 | 3.40e-01 | 87.1% | 75.0% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.54 | 41.0 | 3.08e-01 | 90.3% | 64.6% |
| 5jk0B01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.53 | 41.0 | 2.65e-01 | 93.5% | 64.2% |
| 1m0wA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.53 | 38.0 | 2.66e-01 | 83.9% | 42.6% |
| 1b7yA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 35.0 | 2.24e-01 | 100.0% | 33.2% |
| 3mhsA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.51 | 36.0 | 2.66e-01 | 93.5% | 49.6% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4389597 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.74 | 60.0 | 4.44e-01 | 100.0% | 38.9% |
| 3226646 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.73 | 60.0 | 4.55e-01 | 100.0% | 55.0% |
| 3188795 | 3512.1.1.0 ↗ | beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain | 0.73 | 54.0 | 5.05e-01 | 100.0% | 64.4% |
| 4223286 | 633.23.1.9 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 | 0.72 | 52.0 | 3.25e-01 | 83.9% | 13.7% |
| 3746407 | 5.1.5.64 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 | 0.71 | 54.0 | 3.02e-01 | 90.3% | 27.1% |
| 3800961 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.71 | 56.0 | 3.13e-01 | 96.8% | 34.2% |
| 3401706 | 4.12.1.0 ↗ | beta barrels › SH3 › Methuselah ectodomain › Methuselah ectodomain | 0.70 | 55.0 | 3.71e-01 | 93.5% | 64.0% |
| 4076042 | 5.1.5.64 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DCAF17 | 0.69 | 54.0 | 3.01e-01 | 90.3% | 6.8% |
| 3931413 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.69 | 53.0 | 4.18e-01 | 100.0% | 55.0% |
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.69 | 53.0 | 3.80e-01 | 93.5% | 38.0% |
| 3337215 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.66 | 52.0 | 3.94e-01 | 96.8% | 43.5% |
| 4463651 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.66 | 48.0 | 3.43e-01 | 90.3% | 24.8% |
| 3879372 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.66 | 48.0 | 3.82e-01 | 90.3% | 36.0% |
| 4303651 | 66.1.1.1 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske | 0.64 | 49.0 | 3.55e-01 | 100.0% | 60.2% |
| 4178005 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.64 | 45.0 | 3.15e-01 | 71.0% | 19.2% |
| 8015 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.64 | 46.0 | 3.51e-01 | 100.0% | 38.2% |
| 319515 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.63 | 46.0 | 3.32e-01 | 90.3% | 23.9% |
| 3958173 | 4294.1.1.0 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like | 0.63 | 49.0 | 4.11e-01 | 100.0% | 70.8% |
| 3985577 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.63 | 48.0 | 3.31e-01 | 93.5% | 23.7% |
| 3956314 | 4294.1.1.1 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske | 0.63 | 48.0 | 4.10e-01 | 100.0% | 70.8% |
| 4393963 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.62 | 46.0 | 3.27e-01 | 93.5% | 23.5% |
| 3098421 | 330.3.1.0 ↗ | a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like | 0.62 | 44.0 | 4.00e-01 | 74.2% | 53.5% |
| 3622446 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.62 | 49.0 | 3.98e-01 | 96.8% | 50.0% |
| 3614726 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.62 | 46.0 | 3.24e-01 | 90.3% | 22.5% |
| 8068 | 4294.1.1.1 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Rieske | 0.62 | 50.0 | 4.64e-01 | 100.0% | 70.5% |
| 4232905 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.61 | 47.0 | 3.36e-01 | 96.8% | 27.5% |
| 3513229 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.61 | 44.0 | 3.45e-01 | 90.3% | 32.9% |
| 3645247 | 4357.1.1.6 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_5 | 0.61 | 46.0 | 3.58e-01 | 96.8% | 43.5% |
| 3987188 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.61 | 47.0 | 3.40e-01 | 93.5% | 26.9% |
| 3958963 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 47.0 | 3.40e-01 | 96.8% | 28.6% |
| 3974441 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.60 | 44.0 | 3.17e-01 | 93.5% | 24.5% |
| 1147832 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.60 | 41.0 | 3.01e-01 | 90.3% | 22.8% |
| 1282743 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.59 | 46.0 | 3.32e-01 | 90.3% | 25.5% |
| 3287693 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.59 | 42.0 | 3.07e-01 | 90.3% | 24.1% |
| 3886750 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.59 | 45.0 | 3.83e-01 | 96.8% | 57.1% |
| 5025800 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.59 | 43.0 | 3.00e-01 | 87.1% | 35.0% |
| 2745 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.59 | 41.0 | 3.18e-01 | 96.8% | 28.9% |
| 3968778 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.58 | 42.0 | 3.18e-01 | 96.8% | 28.0% |
| 3258059 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.58 | 42.0 | 3.41e-01 | 90.3% | 40.0% |
| 4419527 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.58 | 42.0 | 2.47e-01 | 83.9% | 11.4% |
| 4389625 | 375.1.1.47 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › BshC | 0.57 | 42.0 | 3.76e-01 | 90.3% | 67.3% |
| 3557904 | 101.1.2.580 ↗ | alpha arrays › HTH › HTH › winged helix domain › DEPDC5_CTD | 0.57 | 46.0 | 3.36e-01 | 100.0% | 45.2% |
| 3583261 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.56 | 40.0 | 3.41e-01 | 90.3% | 40.0% |
| 3958996 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 40.0 | 2.53e-01 | 100.0% | 19.6% |
| 4068176 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.54 | 39.0 | 2.40e-01 | 100.0% | 16.2% |
| 3995519 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.54 | 41.0 | 3.01e-01 | 93.5% | 58.0% |
| 3843142 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.53 | 41.0 | 2.91e-01 | 96.8% | 63.0% |
| 4150519 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.52 | 41.0 | 2.90e-01 | 100.0% | 69.9% |
| 3270757 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.52 | 38.0 | 3.10e-01 | 96.8% | 53.8% |
| 3254631 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 36.0 | 3.18e-01 | 96.8% | 53.8% |
| 3971903 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 36.0 | 2.35e-01 | 87.1% | 13.7% |