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IMGVR_UViG_3300029255_000025-3300029255-Ga0168097_100141115

Arc-Vir

IMGVR_UViG_3300029255_000025-3300029255-Ga0168097_100141115

Quality

79.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 42-168
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04404.18 best ERF 45.1 1.50e-11 95.3% 73.2%
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.78 71.0 6.69e-01 96.1% 86.5%
5aj3E01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.74 44.0 5.39e-01 71.7% 92.6%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 48.0 4.73e-01 78.0% 75.0%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.62 45.0 4.32e-01 98.4% 64.4%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 43.0 4.25e-01 86.6% 68.4%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 52.0 5.06e-01 90.6% 92.7%
3ec9A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 41.0 4.11e-01 86.6% 67.4%
3hk4A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 38.0 3.98e-01 88.2% 68.6%
1s5aB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 40.0 3.92e-01 86.6% 61.5%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 41.0 3.73e-01 72.4% 78.7%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 38.0 3.86e-01 85.8% 64.6%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 34.0 3.51e-01 70.9% 59.2%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 40.0 4.05e-01 80.3% 72.0%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 41.0 3.84e-01 84.3% 57.9%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 4.19e-01 80.3% 73.3%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 4.04e-01 91.3% 70.1%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 38.0 3.88e-01 86.6% 68.0%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 4.02e-01 77.2% 79.1%
2obdA01 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.57 40.0 3.08e-01 71.7% 39.2%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 4.17e-01 80.3% 71.9%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.99e-01 81.1% 77.2%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 43.0 3.81e-01 81.1% 68.6%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 40.0 4.11e-01 79.5% 74.4%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.03e-01 79.5% 69.0%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 47.0 4.68e-01 91.3% 94.1%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 4.07e-01 79.5% 73.6%
1gkuB07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.56 37.0 4.10e-01 76.4% 83.3%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 42.0 3.99e-01 87.4% 66.0%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.93e-01 81.1% 77.1%
3w1eA02 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.56 49.0 4.38e-01 94.5% 95.5%
3dm8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 39.0 3.82e-01 89.0% 65.9%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 47.0 4.79e-01 92.1% 96.0%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 4.04e-01 81.1% 70.3%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.97e-01 80.3% 73.2%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.55 41.0 3.06e-01 78.0% 87.5%
3b8lA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 4.02e-01 81.1% 75.2%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.88e-01 83.5% 68.7%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.99e-01 91.3% 68.2%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.53 37.0 3.66e-01 72.4% 84.4%
2gvhB02 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 39.0 4.06e-01 78.0% 82.1%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 44.0 4.05e-01 92.1% 75.9%
3b7kB01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 39.0 3.76e-01 78.7% 69.3%
5nj5A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.52 36.0 2.98e-01 71.7% 41.1%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.81e-01 77.2% 85.4%
4h3uA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.96e-01 81.1% 80.0%
1vp2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 44.0 3.86e-01 92.9% 96.3%
2vw9B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 38.0 4.11e-01 79.5% 92.4%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.51 45.0 3.87e-01 96.1% 98.5%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 33.0 3.78e-01 78.0% 91.2%
3cobC00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.50 39.0 2.92e-01 82.7% 76.5%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.52e-01 77.2% 69.8%
2gvhC01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 39.0 3.83e-01 80.3% 80.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039841 330.1.1.36 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › ERF 0.91 75.0 8.11e-01 98.4% 99.1%
3250999 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.71 56.0 5.67e-01 85.8% 84.0%
3959285 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.66 43.0 5.02e-01 77.2% 98.8%
3291726 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.64 43.0 4.08e-01 76.4% 56.5%
3958465 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 42.0 4.00e-01 72.4% 56.0%
3881865 330.1.1.26 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_RDM1 0.63 50.0 5.18e-01 85.8% 88.3%
3941713 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.62 45.0 4.40e-01 74.8% 72.9%
3958251 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 42.0 3.94e-01 76.4% 55.8%
3588474 243.1.1.17 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TpcC 0.62 39.0 4.08e-01 77.2% 67.5%
3281675 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 41.0 4.44e-01 75.6% 81.9%
3957821 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.61 42.0 4.19e-01 77.2% 68.0%
3808862 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.61 44.0 4.29e-01 80.3% 68.1%
3372143 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.61 41.0 4.14e-01 70.1% 68.8%
2628859 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.61 46.0 4.58e-01 79.5% 75.4%
3961892 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.61 42.0 4.11e-01 73.2% 64.3%
3591282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 39.0 4.06e-01 88.2% 68.9%
3962739 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.61 41.0 3.90e-01 76.4% 57.3%
3963115 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.61 41.0 3.93e-01 76.4% 59.3%
3278986 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 41.0 3.84e-01 78.0% 56.8%
5057162 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.60 45.0 4.53e-01 98.4% 79.2%
3959534 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.60 40.0 4.01e-01 77.2% 64.4%
4556738 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.60 49.0 3.93e-01 87.4% 89.3%
4189419 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.59 39.0 3.77e-01 75.6% 56.7%
3971296 243.1.1.5 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Tim44 0.59 39.0 3.94e-01 78.7% 65.9%
3377619 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.59 45.0 3.87e-01 78.7% 83.2%
3290399 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 39.0 3.84e-01 71.7% 61.2%
3288890 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 38.0 3.87e-01 73.2% 64.6%
3890886 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 37.0 4.41e-01 71.7% 100.0%
1094951 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.58 41.0 3.84e-01 84.3% 57.9%
3276225 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 37.0 3.94e-01 85.8% 73.6%
3732871 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.57 44.0 3.92e-01 81.1% 70.8%
3969030 7503.1.1.13 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › Lipoprotein_16 0.57 48.0 4.32e-01 89.8% 89.4%
5009713 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.57 43.0 4.01e-01 80.3% 78.8%
4927707 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.57 41.0 3.99e-01 88.2% 67.9%
3373981 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.57 40.0 3.30e-01 71.7% 47.7%
5053591 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 35.0 2.92e-01 72.4% 35.9%
4958928 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 38.0 4.02e-01 72.4% 77.4%
4608992 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.56 42.0 3.97e-01 80.3% 82.3%
4152363 243.1.1.115 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29733 0.56 37.0 3.75e-01 78.7% 67.5%
2722108 243.1.1.67 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.55 37.0 3.80e-01 75.6% 70.2%
3056323 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.55 41.0 3.89e-01 80.3% 76.6%
5027896 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.53 40.0 4.11e-01 100.0% 81.6%
4956104 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 36.0 3.82e-01 71.7% 80.0%
3731226 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 40.0 3.82e-01 80.3% 96.0%
4593105 243.1.1.3 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Scytalone_dh 0.52 41.0 4.14e-01 84.3% 84.8%
3892768 11.1.1.1054 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26562 0.52 39.0 4.02e-01 78.0% 97.5%
3284948 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 33.0 3.98e-01 89.0% 97.6%
4971888 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.51 38.0 3.14e-01 78.0% 48.7%
5076771 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 35.0 3.74e-01 72.4% 80.9%
3165475 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.51 42.0 3.95e-01 89.8% 84.2%
4170378 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 36.0 3.80e-01 73.2% 85.2%
3593966 1116.1.1.0 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain 0.50 45.0 3.86e-01 100.0% 95.2%
4971338 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 34.0 3.58e-01 72.4% 78.2%
3492407 1116.1.1.2 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › MCLN_ECD 0.50 44.0 3.82e-01 100.0% 94.8%
4492722 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 35.0 3.42e-01 71.7% 65.0%