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IMGVR_UViG_3300029267_002151-3300029267-Ga0310068_100093938

Arc-Vir

Identity

Accession:: IMGVR_UViG_3300029267_002151-3300029267-Ga0310068_100093938 ↗
Kingdom:: archaea

Quality

88.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 41-101

PDB

Domain cluster: representative

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ls1A01	1.20.120.140	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain	0.81	42.0	3.65e-01	98.4%	34.8%
6m5nA00	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.56	41.0	2.76e-01	78.7%	42.1%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3503129	170.1.1.0 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C	0.52	44.0	4.02e-01	100.0%	76.5%
3397200	102.1.1.26 ↗	alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › GIDA_C	0.52	35.0	3.34e-01	72.1%	62.7%

D2 medium residues 102-171

PDB

Domain cluster: representative

CATH (13)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4bwiB01	3.30.450.40	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain	0.70	52.0	3.76e-01	78.6%	75.5%
3mk7A00	1.20.210.10	Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain	0.69	50.0	3.02e-01	75.7%	72.5%
2r60A02	3.40.50.2000	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B;	0.68	54.0	3.81e-01	87.1%	42.8%
3rkgA02	1.20.58.340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region	0.57	44.0	3.30e-01	82.9%	34.8%
3w0fA02	1.10.8.50	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 ›	0.57	49.0	3.94e-01	95.7%	64.7%
5wcmA00	3.60.15.10	Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	0.56	49.0	3.35e-01	100.0%	45.6%
1h5zA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.54	45.0	2.82e-01	97.1%	54.1%
2qrlA01	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.54	45.0	3.45e-01	97.1%	61.7%
5d8cA00	1.10.1660.10	Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 ›	0.54	44.0	3.68e-01	91.4%	50.8%
2ft0A00	3.40.630.30	Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT)	0.54	41.0	2.94e-01	84.3%	38.3%
1he1A00	1.20.120.260	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Virulence factor YopE uncharacterised domain	0.54	45.0	3.71e-01	97.1%	76.3%
1wh4A01	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.53	41.0	3.82e-01	88.6%	87.2%
4m5bA00	1.10.1760.20	Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 ›	0.52	47.0	3.30e-01	100.0%	56.5%

ECOD (28)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4250780	621.1.1.3 ↗	alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Sey1_3HB	0.81	46.0	3.66e-01	71.4%	32.0%
4360533	109.4.1.192 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8	0.74	54.0	3.20e-01	75.7%	20.8%
5033203	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.74	38.0	3.82e-01	78.6%	50.0%
3213470	603.1.1.0 ↗	alpha bundles › STAT-like › t-snare proteins › t-snare proteins	0.70	45.0	3.99e-01	97.1%	46.0%
3827908	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.69	51.0	3.88e-01	77.1%	44.5%
3739855	2003.6.1.3 ↗	a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › HK	0.68	49.0	3.21e-01	75.7%	75.4%
3394397	109.4.1.120 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Kinetochor_Ybp2	0.66	60.0	3.48e-01	100.0%	12.5%
3317163	101.1.17.2 ↗	alpha arrays › HTH › HTH › FF domain › FF	0.65	44.0	4.33e-01	94.3%	65.3%
4020488	109.4.1.681 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2	0.65	52.0	3.93e-01	88.6%	35.9%
3600120	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.62	40.0	2.63e-01	77.1%	15.4%
2573905	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.62	38.0	3.46e-01	84.3%	46.7%
4234798	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.59	49.0	4.12e-01	100.0%	54.8%
3735556	192.2.1.0 ↗	alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin	0.59	42.0	3.81e-01	91.4%	55.8%
4525468	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.59	48.0	4.17e-01	100.0%	58.2%
3782133	133.1.1.1 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF	0.58	51.0	3.60e-01	97.1%	89.8%
3818822	4120.1.1.0 ↗	few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP	0.58	45.0	3.56e-01	100.0%	38.7%
4965215	5051.1.1.11 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › CstA	0.58	50.0	3.04e-01	100.0%	72.0%
3740332	1128.1.1.0 ↗	alpha bundles › LYR protein › LYR protein › LYR protein	0.57	51.0	4.90e-01	100.0%	100.0%
4242921	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.56	46.0	3.76e-01	100.0%	48.5%
4247508	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.55	45.0	3.87e-01	100.0%	55.7%
3191826	5058.1.1.0 ↗	alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region	0.54	37.0	3.52e-01	94.3%	57.6%
3240671	5001.1.1.60 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srx	0.53	49.0	3.14e-01	100.0%	35.0%
3263604	148.1.1.0 ↗	alpha arrays › Histone-like › Histone-related › Histone	0.52	42.0	3.68e-01	91.4%	100.0%
4362563	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.52	44.0	3.63e-01	98.6%	50.8%
3681919	109.4.1.35 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT,HEAT_2	0.52	39.0	2.93e-01	80.0%	44.8%
3900844	109.4.1.3400 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_12, TPR_16	0.52	37.0	2.37e-01	77.1%	30.7%
4480321	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.51	41.0	3.56e-01	100.0%	55.0%
4129894	306.7.1.1 ↗	a+b two layers › Glucose permease domain IIB-like › Trigger factor ribosome-binding domain › Trigger factor ribosome-binding domain › Trigger_N	0.50	41.0	3.59e-01	100.0%	58.3%