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IMGVR_UViG_3300029267_002151-3300029267-Ga0310068_100093968

Arc-Vir

IMGVR_UViG_3300029267_002151-3300029267-Ga0310068_100093968

Identity

Kingdom:
archaea

Quality

76.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-71
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6g1nD01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 55.0 4.74e-01 100.0% 51.8%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.72 58.0 4.64e-01 100.0% 44.8%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.67 56.0 4.62e-01 100.0% 71.3%
2rloA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 48.0 3.67e-01 86.3% 35.9%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.60 43.0 3.88e-01 82.4% 54.8%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 47.0 3.78e-01 100.0% 43.9%
1vw4502 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 47.0 3.93e-01 94.1% 51.1%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.57 43.0 3.34e-01 84.3% 78.7%
3t2lA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 48.0 3.51e-01 100.0% 77.4%
1cq3A00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.56 48.0 3.20e-01 100.0% 79.5%
2ljuA01 3.30.160.190 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › atu1810 like domain 0.55 45.0 4.08e-01 98.0% 89.3%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 39.0 3.25e-01 90.2% 45.6%
6cz7A01 2.20.25.90 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ADC-like domains 0.51 37.0 3.57e-01 86.3% 67.7%
3rv0B03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 40.0 3.69e-01 100.0% 67.1%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 38.0 3.02e-01 88.2% 37.9%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4950216 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.74 57.0 5.87e-01 100.0% 89.6%
4929701 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.73 55.0 5.25e-01 100.0% 70.0%
2330315 4100.1.1.5 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB-like_2 0.72 58.0 4.53e-01 100.0% 41.2%
4992542 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.71 55.0 5.39e-01 100.0% 80.0%
4948406 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.69 58.0 5.44e-01 100.0% 76.2%
7731 4100.1.1.4 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.67 53.0 4.67e-01 100.0% 57.5%
4321871 330.2.1.1 ↗ a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.66 57.0 4.51e-01 100.0% 51.8%
3877924 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 57.0 4.89e-01 100.0% 68.2%
3773509 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 48.0 4.55e-01 100.0% 66.7%
3174658 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 51.0 4.26e-01 100.0% 53.3%
3750304 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 50.0 3.84e-01 100.0% 40.0%
4944011 7089.1.1.0 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.59 49.0 4.19e-01 100.0% 55.6%
3994342 913.1.1.0 ↗ few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) 0.59 40.0 3.76e-01 72.5% 66.2%
3927583 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.58 49.0 4.19e-01 100.0% 67.8%
3219161 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.58 40.0 3.26e-01 88.2% 35.5%
4950861 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.58 39.0 2.82e-01 70.6% 27.1%
3512448 220.1.1.37 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.57 46.0 3.30e-01 100.0% 28.7%
3576628 109.21.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.55 45.0 2.57e-01 92.2% 59.1%
3402998 386.1.1.300 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30733 0.54 44.0 4.18e-01 100.0% 86.2%
3452440 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.55e-01 100.0% 42.6%
3990293 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 37.0 3.71e-01 90.2% 72.7%
3732098 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.54 42.0 4.00e-01 96.1% 76.9%
3192572 65.1.1.0 ↗ beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.53 42.0 4.07e-01 94.1% 85.0%
4953226 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.52 38.0 3.53e-01 78.4% 63.1%
4964707 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.52 45.0 3.35e-01 100.0% 77.8%
3532460 2485.1.1.117 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › TXNDC16_3rd 0.52 40.0 3.44e-01 96.1% 84.0%
3266623 4281.1.1.0 ↗ a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p 0.51 32.0 3.37e-01 72.5% 71.1%
3925088 7026.1.1.0 ↗ beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 0.51 40.0 2.74e-01 94.1% 43.1%