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IMGVR_UViG_3300029267_002151-3300029267-Ga0310068_100093979

Arc-Vir

IMGVR_UViG_3300029267_002151-3300029267-Ga0310068_100093979

Identity

Kingdom:
archaea

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-89
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4csrA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.73 54.0 4.60e-01 94.7% 50.0%
3pxxD00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 48.0 3.05e-01 86.0% 53.5%
1vf6A00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.60 49.0 4.89e-01 86.0% 100.0%
3fvwB00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.58 44.0 3.12e-01 84.2% 92.3%
2x3eA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 43.0 3.14e-01 84.2% 34.4%
2gicD02 1.10.3610.10 Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein 0.54 45.0 3.16e-01 96.5% 54.9%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3220453 2484.1.1.65 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Maelstrom 0.69 56.0 3.49e-01 87.7% 81.0%
4880296 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.67 56.0 4.87e-01 93.0% 65.5%
5027313 3236.1.1.1 ↗ alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger 0.62 53.0 3.12e-01 91.2% 22.3%
4665138 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.54 41.0 3.27e-01 82.5% 65.2%
D2 high residues 94-175
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.65e-01 100.0% 81.2%
2xubA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.52e-01 100.0% 78.3%
4jgsD00 1.10.287.210 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.56 28.0 2.83e-01 76.8% 48.2%
6vw7B03 1.20.1440.230 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain 0.55 38.0 3.79e-01 72.0% 97.6%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.52e-01 100.0% 94.5%
3ipiA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 40.0 2.83e-01 80.5% 97.0%
4pwaD00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.52 39.0 3.90e-01 81.7% 95.4%
4p63D00 3.40.910.10 Alpha Beta › 3-Layer(aba) Sandwich › Deoxyhypusine Synthase › Deoxyhypusine synthase 0.52 45.0 3.12e-01 100.0% 27.2%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 39.0 4.34e-01 92.7% 98.5%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.50 35.0 3.32e-01 73.2% 64.0%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.50 40.0 3.45e-01 85.4% 96.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3238440 101.1.1.21 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.75 54.0 6.04e-01 92.7% 95.4%
4021213 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.71 51.0 5.61e-01 100.0% 93.8%
3993206 101.1.2.352 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.69 53.0 5.73e-01 92.7% 95.7%
4967060 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 47.0 4.84e-01 100.0% 80.0%
4935180 198.1.1.0 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.64 55.0 5.11e-01 97.6% 76.0%
4963579 183.1.1.1 ↗ alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C 0.62 44.0 3.71e-01 96.3% 44.4%
3940080 2004.1.1.104 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_2 0.61 44.0 3.01e-01 75.6% 71.3%
4931635 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.60 46.0 4.59e-01 97.6% 79.8%
3590887 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.60 52.0 4.45e-01 100.0% 86.4%
3728300 101.1.2.147 ↗ alpha arrays › HTH › HTH › winged helix domain › ORC4_C 0.59 52.0 4.24e-01 98.8% 72.7%
4679870 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 46.0 4.43e-01 100.0% 73.7%
366446 108.1.1.8 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › S_100 0.52 37.0 3.57e-01 74.4% 88.2%
53174 129.1.1.0 ↗ alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like 0.51 43.0 2.94e-01 93.9% 65.3%
3260341 610.2.1.1 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 › Sec23_helical 0.50 42.0 3.98e-01 97.6% 88.6%
3599188 610.2.1.0 ↗ alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 0.50 42.0 3.91e-01 97.6% 89.1%