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IMGVR_UViG_3300029288_000884-3300029288-Ga0265297_1000614323
Arc-VirIMGVR_UViG_3300029288_000884-3300029288-Ga0265297_1000614323
Identity
- Kingdom:
- archaea
Quality
88.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-41
Domain cluster:
representative
CATH (52)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.92 | 75.0 | 5.25e-01 | 100.0% | 31.0% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.89 | 78.0 | 6.44e-01 | 100.0% | 56.3% |
| 4biuE01 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.87 | 74.0 | 5.58e-01 | 100.0% | 40.8% |
| 5je8B02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.87 | 60.0 | 4.12e-01 | 100.0% | 23.4% |
| 8a1gC01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.83 | 74.0 | 4.77e-01 | 100.0% | 39.2% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.83 | 71.0 | 5.06e-01 | 100.0% | 36.8% |
| 4nb5B02 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.81 | 69.0 | 6.05e-01 | 100.0% | 70.3% |
| 7ymiD01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.81 | 69.0 | 4.51e-01 | 100.0% | 50.0% |
| 2uyyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.79 | 63.0 | 4.56e-01 | 92.7% | 33.3% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 66.0 | 4.99e-01 | 100.0% | 47.1% |
| 1bh9B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.78 | 53.0 | 4.04e-01 | 73.2% | 32.6% |
| 1ma1A01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.77 | 65.0 | 5.75e-01 | 100.0% | 71.9% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.77 | 66.0 | 5.96e-01 | 100.0% | 70.7% |
| 3kd3A02 | 1.10.150.210 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Phosphoserine phosphatase; domain 2 | 0.76 | 58.0 | 5.16e-01 | 90.2% | 58.3% |
| 3q18A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.74 | 60.0 | 4.51e-01 | 100.0% | 39.7% |
| 3zdmB00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.73 | 59.0 | 5.67e-01 | 100.0% | 82.0% |
| 4asvA00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.71 | 57.0 | 4.80e-01 | 100.0% | 51.9% |
| 4u2vA02 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.70 | 63.0 | 4.97e-01 | 100.0% | 58.7% |
| 3ccgA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.69 | 51.0 | 3.27e-01 | 80.5% | 18.0% |
| 2guzA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.69 | 55.0 | 4.80e-01 | 97.6% | 59.2% |
| 4rg8A04 | 1.10.287.1240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 56.0 | 5.08e-01 | 100.0% | 77.4% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 54.0 | 4.71e-01 | 100.0% | 56.8% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.68 | 56.0 | 3.31e-01 | 100.0% | 10.4% |
| 1zmbA02 | 6.10.170.10 | Special › Helix non-globular › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.67 | 51.0 | 5.32e-01 | 92.7% | 100.0% |
| 2g7zA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 51.0 | 3.49e-01 | 85.4% | 22.6% |
| 1eyqA02 | 3.50.70.10 | Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › | 0.65 | 53.0 | 3.64e-01 | 97.6% | 24.5% |
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.65 | 53.0 | 3.85e-01 | 100.0% | 31.3% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.65 | 52.0 | 3.85e-01 | 92.7% | 58.0% |
| 2w02B01 | 1.10.150.640 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle | 0.65 | 56.0 | 4.66e-01 | 100.0% | 79.7% |
| 3lupA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.64 | 49.0 | 3.36e-01 | 85.4% | 22.6% |
| 1vhxB00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.64 | 48.0 | 3.44e-01 | 97.6% | 25.4% |
| 1wgwA00 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.64 | 50.0 | 4.02e-01 | 100.0% | 41.4% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.64 | 55.0 | 3.28e-01 | 97.6% | 95.3% |
| 1tfeA02 | 1.10.286.20 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › | 0.63 | 49.0 | 4.79e-01 | 85.4% | 80.0% |
| 3h4cA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 52.0 | 3.96e-01 | 92.7% | 40.6% |
| 3iylU02 | 1.10.287.1520 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 52.0 | 4.86e-01 | 97.6% | 75.5% |
| 1xdxA01 | 3.30.1140.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › Tctex-1 | 0.62 | 50.0 | 3.87e-01 | 95.1% | 98.0% |
| 1qd1B02 | 3.30.70.670 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Formiminotransferase, C-terminal subdomain | 0.62 | 49.0 | 3.39e-01 | 90.2% | 43.4% |
| 7z67A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 47.0 | 2.97e-01 | 82.9% | 18.3% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 51.0 | 3.28e-01 | 95.1% | 41.1% |
| 2px7A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.61 | 44.0 | 2.81e-01 | 78.0% | 46.3% |
| 3bm1A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.61 | 52.0 | 3.42e-01 | 97.6% | 67.8% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.61 | 54.0 | 4.19e-01 | 100.0% | 62.2% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 3.81e-01 | 90.2% | 57.5% |
| 4dllB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.60 | 47.0 | 3.48e-01 | 100.0% | 57.7% |
| 2r1iA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.58 | 52.0 | 3.64e-01 | 100.0% | 48.5% |
| 1nh2B00 | 1.10.287.100 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 47.0 | 4.54e-01 | 90.2% | 93.5% |
| 3aleA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.57 | 40.0 | 2.91e-01 | 82.9% | 47.6% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.57 | 50.0 | 3.15e-01 | 100.0% | 52.5% |
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.56 | 48.0 | 4.16e-01 | 100.0% | 92.5% |
| 6e6oA00 | 1.20.50.10 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › Pheromone ER-1 | 0.56 | 39.0 | 3.92e-01 | 87.8% | 80.0% |
| 1j09A04 | 1.10.8.70 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 | 0.52 | 35.0 | 3.46e-01 | 80.5% | 64.6% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3723174 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.96 | 87.0 | 6.98e-01 | 100.0% | 54.7% |
| 4025064 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.94 | 86.0 | 7.25e-01 | 100.0% | 63.1% |
| 3169645 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.92 | 84.0 | 4.64e-01 | 100.0% | 8.1% |
| 3929220 | 109.4.1.63 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TAP42 | 0.92 | 82.0 | 5.00e-01 | 100.0% | 17.8% |
| 3748369 | 174.1.1.3 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › p53-inducible11 | 0.91 | 81.0 | 5.41e-01 | 100.0% | 28.3% |
| 3769844 | 4.1.1.310 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26050 | 0.89 | 79.0 | 5.28e-01 | 100.0% | 27.3% |
| 3521328 | 192.10.1.5 ↗ | alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain › Helical_CED_Drosha | 0.88 | 79.0 | 6.90e-01 | 100.0% | 68.3% |
| 4120406 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.88 | 78.0 | 5.64e-01 | 100.0% | 40.0% |
| 4654983 | 605.2.1.3 ↗ | alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Seryl_tRNA_N | 0.87 | 77.0 | 5.58e-01 | 100.0% | 65.5% |
| 5061319 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.87 | 73.0 | 5.24e-01 | 95.1% | 36.5% |
| 3788679 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.86 | 74.0 | 4.30e-01 | 100.0% | 11.5% |
| 3709390 | 4207.1.2.0 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region | 0.86 | 74.0 | 5.43e-01 | 100.0% | 37.3% |
| 5039030 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.83 | 72.0 | 6.58e-01 | 100.0% | 74.5% |
| 3928221 | 4.1.1.310 ↗ | beta barrels › SH3 › SH3 › SH3 › PF26050 | 0.80 | 69.0 | 4.77e-01 | 100.0% | 33.6% |
| 4017151 | 109.4.1.1563 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_M, HAT_Syf1_CNRKL1_C, HAT_Syf1_CNRKL1_N | 0.78 | 61.0 | 3.43e-01 | 92.7% | 7.1% |
| 3539738 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.76 | 62.0 | 3.94e-01 | 100.0% | 17.8% |
| 3700089 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.74 | 60.0 | 5.37e-01 | 100.0% | 63.1% |
| 3315676 | 6087.1.1.0 ↗ | extended segments › N-terminal region of NMB0537 › N-terminal region of NMB0537 › N-terminal region of NMB0537 | 0.73 | 60.0 | 6.09e-01 | 92.7% | 100.0% |
| 4569363 | 109.4.1.889 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_M | 0.72 | 55.0 | 3.72e-01 | 100.0% | 21.1% |
| 3735933 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.71 | 59.0 | 4.12e-01 | 97.6% | 42.1% |
| 2772104 | 103.1.1.13 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RNA_pol_Rpo13 | 0.70 | 57.0 | 5.63e-01 | 100.0% | 90.9% |
| 4620052 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.70 | 58.0 | 3.43e-01 | 100.0% | 11.5% |
| 3565003 | 165.1.1.3 ↗ | alpha duplicates or obligate multimers › Dimerisation interlock › SinR repressor dimerisation domain-like › SinR repressor dimerisation domain-like › PF28222 | 0.68 | 52.0 | 5.57e-01 | 82.9% | 97.1% |
| 3773906 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.67 | 56.0 | 3.59e-01 | 95.1% | 18.6% |
| 3966348 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.66 | 57.0 | 4.51e-01 | 97.6% | 48.2% |
| 3994704 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.66 | 55.0 | 4.78e-01 | 95.1% | 100.0% |
| 4248629 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.66 | 57.0 | 5.61e-01 | 100.0% | 91.1% |
| 3895581 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.66 | 55.0 | 3.93e-01 | 95.1% | 32.0% |
| 1383934 | 104.1.1.2 ↗ | alpha duplicates or obligate multimers › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA, alpha-helical domain › TFIIA | 0.66 | 53.0 | 4.75e-01 | 92.7% | 90.0% |
| 3926800 | 3443.1.1.0 ↗ | alpha duplicates or obligate multimers › Get5 carboxyl domain › Get5 carboxyl domain › Get5 carboxyl domain | 0.63 | 55.0 | 4.85e-01 | 100.0% | 81.7% |
| 4502641 | 589.1.1.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N | 0.60 | 53.0 | 3.45e-01 | 100.0% | 91.3% |
| 4996648 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.58 | 48.0 | 3.34e-01 | 97.6% | 30.8% |
| 3889071 | 129.1.1.0 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like | 0.58 | 45.0 | 3.53e-01 | 95.1% | 35.7% |