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IMGVR_UViG_3300029303_000310-3300029303-Ga0168703_100008863
Arc-VirIMGVR_UViG_3300029303_000310-3300029303-Ga0168703_100008863
Identity
- Kingdom:
- archaea
Quality
92.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-101
Domain cluster:
rep: NC_070967.1__YP_010671354.1__PQC17_gp205__00205__D25-115
D2
medium
residues 108-150
Domain cluster:
representative
CATH (49)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.74 | 62.0 | 4.98e-01 | 100.0% | 78.3% |
| 2x9zA02 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.71 | 63.0 | 4.63e-01 | 100.0% | 39.8% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.71 | 59.0 | 4.64e-01 | 100.0% | 44.2% |
| 1p6oA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.69 | 55.0 | 3.90e-01 | 97.7% | 74.4% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 58.0 | 4.62e-01 | 97.7% | 58.1% |
| 6v93E01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.68 | 59.0 | 3.80e-01 | 100.0% | 34.3% |
| 5eo9B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 55.0 | 4.19e-01 | 97.7% | 53.6% |
| 4i0kA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 55.0 | 4.24e-01 | 100.0% | 62.9% |
| 6x4tA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 54.0 | 4.09e-01 | 100.0% | 60.9% |
| 4jdzA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 53.0 | 4.01e-01 | 100.0% | 37.4% |
| 3eqvA02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.64 | 46.0 | 3.38e-01 | 81.4% | 48.1% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.64 | 52.0 | 4.55e-01 | 97.7% | 98.6% |
| 3d33A00 | 2.60.40.3080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 51.0 | 4.15e-01 | 100.0% | 50.0% |
| 5eiqA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.63 | 51.0 | 4.18e-01 | 100.0% | 49.5% |
| 2ckaA01 | 3.40.5.120 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.63 | 48.0 | 4.67e-01 | 90.7% | 83.7% |
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.63 | 47.0 | 4.62e-01 | 95.3% | 96.0% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.63 | 49.0 | 4.14e-01 | 95.3% | 98.8% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.62 | 50.0 | 4.39e-01 | 100.0% | 65.3% |
| 4j3vA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 51.0 | 3.98e-01 | 100.0% | 53.3% |
| 2wanA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 51.0 | 4.02e-01 | 100.0% | 50.0% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 49.0 | 4.47e-01 | 100.0% | 71.2% |
| 4kq7A01 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.61 | 49.0 | 3.47e-01 | 100.0% | 42.0% |
| 3ue3A02 | 3.30.450.330 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.61 | 44.0 | 3.13e-01 | 79.1% | 79.6% |
| 5dcaA08 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.60 | 49.0 | 3.81e-01 | 100.0% | 52.7% |
| 4kq7A02 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.59 | 47.0 | 3.17e-01 | 100.0% | 38.4% |
| 3lrrA00 | 2.170.150.30 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain | 0.59 | 49.0 | 3.62e-01 | 95.3% | 78.5% |
| 3a21A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.59 | 45.0 | 3.71e-01 | 97.7% | 42.9% |
| 3au4A02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.59 | 47.0 | 3.90e-01 | 100.0% | 71.3% |
| 3tw8A01 | 3.30.450.200 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin module | 0.58 | 41.0 | 3.00e-01 | 76.7% | 26.8% |
| 1pbuA00 | 3.30.70.1010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain | 0.58 | 44.0 | 3.23e-01 | 100.0% | 54.9% |
| 3p1vA01 | 2.60.40.3250 | Mainly Beta › Sandwich › Immunoglobulin-like › Peptidase M64, N-terminal domain | 0.57 | 50.0 | 3.49e-01 | 100.0% | 66.7% |
| 1bu6O01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.57 | 43.0 | 2.87e-01 | 97.7% | 27.5% |
| 4nzfD02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 45.0 | 3.72e-01 | 97.7% | 46.7% |
| 3gdiA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 47.0 | 3.59e-01 | 100.0% | 83.8% |
| 3r7wB02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.56 | 49.0 | 3.56e-01 | 97.7% | 63.6% |
| 4dipH00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.55 | 43.0 | 3.36e-01 | 97.7% | 68.9% |
| 5x6vF00 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 48.0 | 3.52e-01 | 100.0% | 63.6% |
| 4ftxB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.55 | 49.0 | 3.45e-01 | 100.0% | 77.3% |
| 3r7wC02 | 3.30.450.190 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.54 | 47.0 | 3.53e-01 | 97.7% | 65.4% |
| 1w5dA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 44.0 | 2.84e-01 | 97.7% | 73.4% |
| 2w40A01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.54 | 41.0 | 2.74e-01 | 100.0% | 92.9% |
| 1ktbA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 39.0 | 3.35e-01 | 95.3% | 45.1% |
| 3rrkA01 | 3.30.70.2170 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 38.0 | 3.49e-01 | 90.7% | 100.0% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 44.0 | 2.78e-01 | 97.7% | 83.2% |
| 3gqqA00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.52 | 41.0 | 2.93e-01 | 97.7% | 28.7% |
| 3r5xD02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 43.0 | 3.00e-01 | 100.0% | 47.7% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 42.0 | 2.75e-01 | 97.7% | 87.5% |
| 2e7yB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.51 | 43.0 | 2.68e-01 | 97.7% | 84.4% |
| 2qh7B01 | 3.40.5.90 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › CDGSH iron-sulfur domain, mitoNEET-type | 0.51 | 38.0 | 3.76e-01 | 97.7% | 83.0% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5070413 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.86 | 69.0 | 7.11e-01 | 90.7% | 92.5% |
| 4186857 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.86 | 72.0 | 7.40e-01 | 97.7% | 100.0% |
| 4531584 | 4012.1.1.0 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase | 0.82 | 66.0 | 6.80e-01 | 97.7% | 100.0% |
| 3510118 | 4076.1.1.0 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like | 0.76 | 69.0 | 6.30e-01 | 100.0% | 81.8% |
| 3177414 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.75 | 64.0 | 6.14e-01 | 100.0% | 82.0% |
| 3923896 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.75 | 65.0 | 4.25e-01 | 100.0% | 24.9% |
| 3412169 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.74 | 65.0 | 4.90e-01 | 100.0% | 49.5% |
| 3584610 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.74 | 64.0 | 4.41e-01 | 100.0% | 30.7% |
| 3625061 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.74 | 64.0 | 4.16e-01 | 100.0% | 24.2% |
| 4929510 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 57.0 | 5.47e-01 | 90.7% | 100.0% |
| 3572391 | 712.1.1.1 ↗ | beta sandwiches › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › ENV polyprotein, receptor-binding domain › TLV_coat | 0.72 | 63.0 | 4.09e-01 | 100.0% | 99.5% |
| 3257660 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.72 | 61.0 | 4.45e-01 | 100.0% | 49.6% |
| 3730382 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.71 | 59.0 | 3.89e-01 | 100.0% | 79.5% |
| 4295852 | 2492.1.1.17 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam | 0.70 | 58.0 | 4.09e-01 | 100.0% | 85.3% |
| 5062347 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.69 | 59.0 | 4.97e-01 | 100.0% | 62.7% |
| 3784857 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.69 | 56.0 | 3.59e-01 | 100.0% | 49.6% |
| 3909337 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.68 | 58.0 | 4.31e-01 | 100.0% | 59.2% |
| 5036988 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 57.0 | 4.35e-01 | 100.0% | 46.7% |
| 1877446 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.66 | 55.0 | 4.14e-01 | 100.0% | 37.8% |
| 5067734 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.66 | 56.0 | 4.67e-01 | 100.0% | 55.0% |
| 3633409 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.65 | 55.0 | 4.50e-01 | 97.7% | 51.2% |
| 3848604 | 11.1.1.1057 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › A2M, MG2, A2M_BRD, MG4, MG1 | 0.65 | 55.0 | 3.08e-01 | 100.0% | 9.9% |
| 3858274 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.64 | 54.0 | 4.17e-01 | 100.0% | 44.8% |
| 3701633 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.64 | 53.0 | 4.39e-01 | 100.0% | 52.9% |
| 4964937 | 821.1.1.15 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 | 0.62 | 48.0 | 4.35e-01 | 100.0% | 72.9% |
| 4065108 | 284.3.1.1 ↗ | a+b two layers › FKBP-like › Colicin E3 immunity protein › Colicin E3 immunity protein › Cloacin_immun | 0.61 | 51.0 | 4.22e-01 | 100.0% | 94.1% |
| 3166110 | 223.3.1.2 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 | 0.61 | 43.0 | 3.13e-01 | 79.1% | 97.0% |
| 4963 | 4012.1.1.1 ↗ | a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C | 0.59 | 45.0 | 4.60e-01 | 97.7% | 100.0% |
| 5046495 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 49.0 | 3.68e-01 | 95.3% | 55.0% |
| 4020851 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 50.0 | 3.51e-01 | 97.7% | 66.9% |
| 3176963 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 49.0 | 3.50e-01 | 100.0% | 96.2% |
| 3794632 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.56 | 50.0 | 3.40e-01 | 97.7% | 58.1% |
| 4944953 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 39.0 | 3.08e-01 | 74.4% | 31.4% |
| 4018561 | 223.2.1.10 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Gtr1_RagA | 0.56 | 50.0 | 3.39e-01 | 97.7% | 71.0% |
| 3270265 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.54 | 38.0 | 2.85e-01 | 81.4% | 72.6% |
| 3983387 | 223.1.1.57 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif | 0.53 | 47.0 | 3.20e-01 | 100.0% | 39.4% |
| 4382604 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 46.0 | 3.46e-01 | 100.0% | 56.2% |
| 3715519 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 45.0 | 2.87e-01 | 97.7% | 31.7% |
| 3714622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 44.0 | 3.21e-01 | 97.7% | 54.2% |
| 4406921 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.50 | 43.0 | 3.49e-01 | 97.7% | 68.2% |