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IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452
Arc-VirIMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033452
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-193
Domain cluster:
rep: pre4_saliva_scaffold_3_prodigal-single.1__X__X__00167__D2-182
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01510.31 best | Amidase_2 | 45.0 | 1.90e-11 | 78.0% | 89.9% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rdrA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.89 | 69.0 | 7.71e-01 | 95.3% | 98.7% |
| 1yb0B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.88 | 71.0 | 7.81e-01 | 98.4% | 98.7% |
| 3latA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.85 | 76.0 | 7.42e-01 | 100.0% | 85.5% |
| 4ivvA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.84 | 72.0 | 7.59e-01 | 97.9% | 97.7% |
| 2rkqA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.77 | 63.0 | 6.71e-01 | 94.2% | 95.3% |
| 4olsA00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.77 | 71.0 | 7.23e-01 | 98.4% | 98.4% |
| 2y28B00 | 3.40.80.10 | Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like | 0.77 | 65.0 | 6.81e-01 | 94.8% | 94.9% |
| 6ecpB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.61 | 30.0 | 3.47e-01 | 88.0% | 61.4% |
| 3og9A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 38.0 | 3.78e-01 | 93.7% | 60.2% |
| 1u6zA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 31.0 | 3.86e-01 | 88.0% | 82.5% |
| 2f48A02 | 3.40.50.460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain | 0.52 | 33.0 | 3.35e-01 | 95.3% | 61.7% |
| 3kqxL01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.51 | 43.0 | 4.38e-01 | 90.1% | 97.3% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4140249 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.89 | 71.0 | 7.68e-01 | 98.4% | 95.2% |
| 1902111 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.87 | 70.0 | 7.59e-01 | 97.9% | 95.8% |
| 1902112 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.85 | 76.0 | 7.42e-01 | 100.0% | 85.5% |
| 1904118 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.84 | 72.0 | 7.62e-01 | 97.9% | 98.8% |
| 2845647 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.83 | 63.0 | 7.03e-01 | 97.4% | 96.1% |
| 1914461 | 285.1.1.0 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like | 0.83 | 72.0 | 7.58e-01 | 97.9% | 98.3% |
| 4088805 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.81 | 65.0 | 6.62e-01 | 94.2% | 84.9% |
| 4265814 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.80 | 67.0 | 7.18e-01 | 94.8% | 99.4% |
| 4031908 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.79 | 72.0 | 7.27e-01 | 98.4% | 95.8% |
| 2445367 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.77 | 57.0 | 6.25e-01 | 94.2% | 91.7% |
| 3967132 | 285.1.1.1 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › Amidase_2 | 0.77 | 66.0 | 6.81e-01 | 94.8% | 93.9% |
| 4034532 | 285.1.1.0 ↗ | a+b three layers › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like › N-acetylmuramoyl-L-alanine amidase-like | 0.75 | 61.0 | 6.66e-01 | 97.9% | 99.4% |
| 4418829 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.68 | 32.0 | 3.26e-01 | 89.5% | 44.2% |
| 3261010 | 7579.1.1.58 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 | 0.67 | 39.0 | 3.60e-01 | 95.8% | 43.7% |
| 4986412 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.66 | 36.0 | 4.19e-01 | 88.5% | 73.3% |
| 4023705 | 7529.1.1.0 ↗ | a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like | 0.62 | 42.0 | 4.38e-01 | 91.1% | 72.2% |
| 3409719 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.56 | 39.0 | 3.29e-01 | 89.0% | 41.9% |
D2
high
residues 207-248
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wadA01 | 6.20.70.10 | Special › Other non-globular › Ubiquitin Ligase Nedd4; Chain: W; › | 0.57 | 33.0 | 3.67e-01 | 97.6% | 76.7% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3782543 | 109.4.1.356 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans | 0.51 | 36.0 | 2.08e-01 | 78.6% | 70.0% |
| 3956367 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.51 | 37.0 | 2.94e-01 | 85.7% | 81.9% |
D3
medium
residues 259-301
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 71.5 | 6.00e-20 | 97.7% | 95.3% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.97 | 90.0 | 7.59e-01 | 100.0% | 64.2% |
| 5c8qB02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.97 | 90.0 | 8.76e-01 | 100.0% | 93.5% |
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.91 | 81.0 | 6.75e-01 | 100.0% | 60.3% |
| 4b8vA03 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.84 | 74.0 | 7.11e-01 | 100.0% | 87.8% |
| 2mtzA01 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.82 | 69.0 | 6.64e-01 | 100.0% | 84.0% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.72 | 64.0 | 5.04e-01 | 100.0% | 53.4% |
| 2r1jL00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 46.0 | 4.18e-01 | 90.7% | 78.8% |
ECOD (98)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3969916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 1.00 | 93.0 | 7.62e-01 | 100.0% | 60.0% |
| 4249176 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 1.00 | 93.0 | 8.06e-01 | 100.0% | 70.0% |
| 3464064 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 92.0 | 7.05e-01 | 100.0% | 49.4% |
| 3985839 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 92.0 | 7.53e-01 | 100.0% | 60.0% |
| 3381619 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 92.0 | 5.32e-01 | 100.0% | 14.3% |
| 3501971 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 91.0 | 7.98e-01 | 100.0% | 70.0% |
| 4680476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 93.0 | 7.68e-01 | 100.0% | 61.4% |
| 3452845 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 91.0 | 8.25e-01 | 100.0% | 76.4% |
| 2035755 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 91.0 | 6.67e-01 | 100.0% | 42.4% |
| 4448562 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 91.0 | 8.25e-01 | 100.0% | 76.4% |
| 3974521 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 91.0 | 7.96e-01 | 100.0% | 70.0% |
| 3838194 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.99 | 91.0 | 8.98e-01 | 100.0% | 93.3% |
| 3337328 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.98 | 90.0 | 5.28e-01 | 100.0% | 14.8% |
| 3655335 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 90.0 | 5.80e-01 | 100.0% | 25.5% |
| 4205026 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 90.0 | 7.64e-01 | 100.0% | 64.6% |
| 4404011 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 90.0 | 7.41e-01 | 100.0% | 60.0% |
| 3165071 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.98 | 90.0 | 8.11e-01 | 100.0% | 76.4% |
| 3898121 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.97 | 89.0 | 8.05e-01 | 100.0% | 76.4% |
| 3963287 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.97 | 85.0 | 8.78e-01 | 95.3% | 100.0% |
| 2124476 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.97 | 90.0 | 6.10e-01 | 100.0% | 31.9% |
| 2047861 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 90.0 | 7.96e-01 | 100.0% | 74.1% |
| 3417561 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 90.0 | 5.24e-01 | 100.0% | 14.6% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 90.0 | 5.18e-01 | 100.0% | 14.8% |
| 3458171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 89.0 | 7.60e-01 | 100.0% | 66.2% |
| 2124917 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 90.0 | 5.81e-01 | 100.0% | 26.7% |
| 3337080 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.96 | 88.0 | 7.78e-01 | 100.0% | 71.7% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 89.0 | 8.09e-01 | 100.0% | 83.6% |
| 3426433 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.96 | 89.0 | 7.80e-01 | 100.0% | 71.7% |
| 2124918 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 88.0 | 5.98e-01 | 100.0% | 33.8% |
| 4118675 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 86.0 | 8.48e-01 | 100.0% | 93.3% |
| 3324708 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.95 | 87.0 | 7.66e-01 | 100.0% | 71.7% |
| 3981327 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 88.0 | 8.05e-01 | 100.0% | 79.6% |
| 3903953 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 83.0 | 7.88e-01 | 100.0% | 82.0% |
| 4157099 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 87.0 | 8.40e-01 | 100.0% | 89.6% |
| 4069716 | 101.15.1.14 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 | 0.94 | 86.0 | 6.02e-01 | 100.0% | 38.3% |
| 3303205 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 87.0 | 7.62e-01 | 100.0% | 75.0% |
| 4390103 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.94 | 87.0 | 7.64e-01 | 100.0% | 71.7% |
| 4137479 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 86.0 | 6.68e-01 | 100.0% | 50.6% |
| 2074716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 86.0 | 8.04e-01 | 100.0% | 84.3% |
| 3165082 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.93 | 86.0 | 8.10e-01 | 100.0% | 86.0% |
| 3349612 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.92 | 81.0 | 7.68e-01 | 100.0% | 82.0% |
| 4500818 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 84.0 | 7.82e-01 | 100.0% | 86.5% |
| 3636417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.92 | 83.0 | 7.72e-01 | 100.0% | 84.9% |
| 3230171 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 85.0 | 8.01e-01 | 100.0% | 86.0% |
| 4277578 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.92 | 84.0 | 7.96e-01 | 100.0% | 86.0% |
| 4379136 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 84.0 | 5.96e-01 | 100.0% | 39.1% |
| 1758716 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 83.0 | 7.76e-01 | 100.0% | 82.7% |
| 3190144 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 83.0 | 7.90e-01 | 100.0% | 87.8% |
| 3821115 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.91 | 83.0 | 6.46e-01 | 100.0% | 51.8% |
| 4491522 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.91 | 83.0 | 7.31e-01 | 100.0% | 71.7% |
| 3365578 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.90 | 82.0 | 6.55e-01 | 100.0% | 61.3% |
| 3810505 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 82.0 | 5.34e-01 | 100.0% | 26.1% |
| 3186012 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.90 | 81.0 | 7.23e-01 | 100.0% | 76.7% |
| 3982977 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.90 | 82.0 | 7.24e-01 | 100.0% | 71.7% |
| 3964929 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 79.0 | 7.86e-01 | 100.0% | 93.3% |
| 3517460 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 83.0 | 7.54e-01 | 100.0% | 78.2% |
| 3846469 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 83.0 | 6.31e-01 | 100.0% | 47.8% |
| 4022922 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.90 | 82.0 | 7.47e-01 | 100.0% | 78.2% |
| 3641672 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.89 | 81.0 | 6.64e-01 | 100.0% | 57.3% |
| 3320955 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.89 | 81.0 | 6.98e-01 | 100.0% | 66.2% |
| 4216124 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 8.01e-01 | 100.0% | 95.6% |
| 3234671 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 7.44e-01 | 100.0% | 78.2% |
| 4337597 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 80.0 | 6.60e-01 | 100.0% | 60.0% |
| 3367888 | 101.15.1.5 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 | 0.89 | 80.0 | 6.74e-01 | 100.0% | 68.6% |
| 3191020 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 80.0 | 7.12e-01 | 100.0% | 78.3% |
| 3946658 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.89 | 81.0 | 6.75e-01 | 100.0% | 62.9% |
| 3691758 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.88 | 80.0 | 7.35e-01 | 100.0% | 81.8% |
| 3181142 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 78.0 | 7.41e-01 | 97.7% | 94.0% |
| 3217972 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 79.0 | 7.04e-01 | 100.0% | 71.7% |
| 4149501 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 80.0 | 7.60e-01 | 100.0% | 86.0% |
| 3185732 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 77.0 | 7.14e-01 | 100.0% | 89.1% |
| 3248434 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 78.0 | 7.47e-01 | 100.0% | 91.8% |
| 3186054 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.87 | 77.0 | 7.35e-01 | 100.0% | 84.0% |
| 3338947 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.87 | 78.0 | 6.77e-01 | 100.0% | 67.7% |
| 3671032 | 101.15.1.11 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_NFP | 0.87 | 78.0 | 5.15e-01 | 100.0% | 27.9% |
| 3182365 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.87 | 76.0 | 7.13e-01 | 100.0% | 81.1% |
| 3191424 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 77.0 | 7.09e-01 | 100.0% | 96.4% |
| 3190118 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 77.0 | 7.32e-01 | 100.0% | 90.0% |
| 4492966 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 76.0 | 7.02e-01 | 100.0% | 78.2% |
| 3970704 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.85 | 75.0 | 6.55e-01 | 100.0% | 66.2% |
| 3247196 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.85 | 75.0 | 6.73e-01 | 100.0% | 71.7% |
| 3691772 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 75.0 | 6.94e-01 | 100.0% | 78.2% |
| 3989756 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 74.0 | 7.22e-01 | 100.0% | 95.8% |
| 4128043 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 75.0 | 7.43e-01 | 100.0% | 95.6% |
| 1759182 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 74.0 | 7.04e-01 | 100.0% | 84.3% |
| 2042916 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 74.0 | 6.88e-01 | 100.0% | 79.6% |
| 3720958 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 73.0 | 6.98e-01 | 100.0% | 86.0% |
| 4678697 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.84 | 72.0 | 7.00e-01 | 100.0% | 98.0% |
| 3240624 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 73.0 | 6.73e-01 | 100.0% | 78.2% |
| 1178373 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 71.0 | 6.36e-01 | 100.0% | 68.3% |
| 4008890 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.79 | 67.0 | 6.27e-01 | 100.0% | 85.5% |
| 4027085 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.77 | 62.0 | 5.49e-01 | 90.7% | 79.4% |
| 4134004 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.76 | 58.0 | 5.34e-01 | 88.4% | 81.7% |
| 4292036 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.75 | 63.0 | 5.73e-01 | 97.7% | 86.7% |
| 4447894 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.75 | 63.0 | 5.85e-01 | 97.7% | 92.7% |
| 3267280 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.74 | 60.0 | 5.89e-01 | 100.0% | 88.0% |
| 4107179 | 101.1.9.8 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N | 0.73 | 62.0 | 5.50e-01 | 100.0% | 87.7% |
| 3687429 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.50 | 38.0 | 2.39e-01 | 90.7% | 71.4% |
D4
medium
residues 316-355
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF08230.17 best | CW_7 | 73.3 | 1.40e-20 | 97.5% | 92.5% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 54.0 | 4.77e-01 | 100.0% | 66.7% |
| 1gdtB03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 50.0 | 4.91e-01 | 100.0% | 82.2% |
| 3dteA02 | 1.10.10.1030 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain | 0.64 | 50.0 | 5.02e-01 | 95.0% | 100.0% |
| 3d5lB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 49.0 | 3.84e-01 | 95.0% | 41.2% |
| 4zi3D00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.63 | 46.0 | 3.55e-01 | 100.0% | 61.7% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 49.0 | 3.88e-01 | 97.5% | 50.5% |
| 3tgnB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 51.0 | 4.52e-01 | 100.0% | 71.4% |
| 7ep3A01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.60 | 49.0 | 3.12e-01 | 100.0% | 21.8% |
| 3mklA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.59 | 44.0 | 3.48e-01 | 95.0% | 39.4% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 46.0 | 3.92e-01 | 100.0% | 59.0% |
| 4ha8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 44.0 | 4.07e-01 | 100.0% | 63.5% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 4.06e-01 | 100.0% | 69.1% |
| 2z99A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 44.0 | 3.67e-01 | 100.0% | 44.8% |
| 4b28A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.56 | 46.0 | 3.03e-01 | 100.0% | 65.8% |
| 1vquA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.55 | 45.0 | 3.96e-01 | 100.0% | 62.7% |
| 3umgA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 46.0 | 3.87e-01 | 92.5% | 85.9% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 42.0 | 4.24e-01 | 100.0% | 97.4% |
| 4muoA01 | 1.20.970.10 | Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C | 0.53 | 43.0 | 3.68e-01 | 100.0% | 63.9% |
| 1t98A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 44.0 | 3.48e-01 | 100.0% | 87.4% |
| 3mczA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.35e-01 | 97.5% | 50.0% |
| 2l37A00 | 6.10.250.890 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 34.0 | 3.37e-01 | 72.5% | 60.5% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 40.0 | 3.48e-01 | 100.0% | 61.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2036630 | 101.35.1.3 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › CW_7 | 0.98 | 92.0 | 8.15e-01 | 100.0% | 74.1% |
| 3244076 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.68 | 56.0 | 4.86e-01 | 100.0% | 65.7% |
| 4158504 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.68 | 54.0 | 5.32e-01 | 95.0% | 93.3% |
| 3519321 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 52.0 | 5.27e-01 | 95.0% | 100.0% |
| 3710980 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.64 | 51.0 | 5.00e-01 | 97.5% | 93.3% |
| 3574083 | 101.1.1.1 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain | 0.62 | 47.0 | 4.69e-01 | 100.0% | 91.1% |
| 3798329 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.62 | 50.0 | 3.74e-01 | 95.0% | 82.7% |
| 4954667 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 46.0 | 4.46e-01 | 100.0% | 90.0% |
| 4011149 | 2003.1.5.82 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 | 0.56 | 43.0 | 2.67e-01 | 92.5% | 25.1% |