←Back to structures
IMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033458
Arc-VirIMGVR_UViG_3300029305_005928-3300029305-Ga0307249_101033458
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-54_167-268
Domain cluster:
rep: putative_DNA_N6-adenine_methyltransferase__YP_003969980__Cafeteria_roenbergensis_virus_BV-PW1__693272__D56-156
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02086.22 best | MethyltransfD12 | 69.3 | 6.20e-19 | 61.8% | 35.3% |
| PF02086.22 | MethyltransfD12 | 37.6 | 2.90e-09 | 33.3% | 18.4% |
D2
high
residues 73-157
Domain cluster:
rep: SR-VP_0-2_scaffold_141_2071242_prodigal-single.1__X__X__00363__D253-326
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02086.22 best | MethyltransfD12 | 49.0 | 9.60e-13 | 96.5% | 27.5% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2g1pA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.91 | 83.0 | 7.75e-01 | 100.0% | 81.0% |
| 2dpmA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.87 | 81.0 | 7.55e-01 | 100.0% | 81.6% |
| 1q0sA02 | 1.10.1020.10 | Mainly Alpha › Orthogonal Bundle › Adenine-specific Methyltransferase; domain 2 › Adenine-specific Methyltransferase, Domain 2 | 0.76 | 66.0 | 6.33e-01 | 98.8% | 83.2% |
| 2jqtA00 | 1.20.1280.40 | Mainly Alpha › Up-down Bundle › Monooxygenase › HHA | 0.60 | 35.0 | 4.11e-01 | 78.8% | 86.0% |
| 5ejrA01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.59 | 51.0 | 4.00e-01 | 100.0% | 58.7% |
| 3qbeA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.57 | 38.0 | 3.06e-01 | 70.6% | 100.0% |
| 2n1rA00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.55 | 39.0 | 3.40e-01 | 75.3% | 62.7% |
| 3nufB00 | 1.10.1790.10 | Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain | 0.54 | 37.0 | 3.40e-01 | 70.6% | 63.4% |
| 1rz4A01 | 1.25.40.250 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › ARM repeat; domain 1 | 0.53 | 43.0 | 3.81e-01 | 90.6% | 60.8% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.53 | 33.0 | 3.55e-01 | 75.3% | 74.6% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 30.0 | 3.27e-01 | 74.1% | 69.1% |
| 4ezbA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.51 | 39.0 | 3.55e-01 | 82.4% | 94.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4949366 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.92 | 88.0 | 5.78e-01 | 100.0% | 32.3% |
| 4482107 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.91 | 88.0 | 5.75e-01 | 100.0% | 30.3% |
| 4006858 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.91 | 82.0 | 5.55e-01 | 100.0% | 29.7% |
| 4988477 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.91 | 81.0 | 5.43e-01 | 100.0% | 28.6% |
| 5025561 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.90 | 80.0 | 5.43e-01 | 100.0% | 29.9% |
| 4950762 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.88 | 77.0 | 5.18e-01 | 100.0% | 28.9% |
| 4392983 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.81 | 75.0 | 5.05e-01 | 100.0% | 29.5% |
| 4585065 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.77 | 71.0 | 4.15e-01 | 100.0% | 14.0% |
| 4241513 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.76 | 68.0 | 4.59e-01 | 100.0% | 27.8% |
| 9374 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.75 | 67.0 | 4.70e-01 | 100.0% | 32.0% |
| 3837941 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.73 | 66.0 | 5.07e-01 | 100.0% | 46.1% |
| 4200568 | 2003.1.5.20 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MethyltransfD12 | 0.73 | 66.0 | 4.55e-01 | 100.0% | 30.5% |
| 3552762 | 109.4.1.410 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COBRA1 | 0.71 | 49.0 | 2.93e-01 | 70.6% | 11.6% |
| 2706252 | 633.16.2.2 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › N-terminal domain of antitoxin HigA › PF29431 | 0.69 | 44.0 | 4.69e-01 | 78.8% | 72.7% |
| 5039002 | 109.4.1.158 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ERAP1_C | 0.67 | 50.0 | 3.35e-01 | 78.8% | 27.1% |
| 3984193 | 633.16.2.2 ↗ | alpha bundles › Bromodomain-like › PMT helical bundle domain-like › N-terminal domain of antitoxin HigA › PF29431 | 0.66 | 44.0 | 4.73e-01 | 78.8% | 78.7% |
| 3254737 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 48.0 | 3.79e-01 | 77.6% | 63.4% |
| 3577291 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 46.0 | 4.00e-01 | 77.6% | 87.7% |
| 3253880 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 44.0 | 3.92e-01 | 76.5% | 88.0% |
| 4999958 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.61 | 43.0 | 2.78e-01 | 74.1% | 26.1% |
| 5046243 | 106.1.1.2 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Phycobilisome | 0.60 | 40.0 | 3.60e-01 | 82.4% | 49.2% |
| 4355519 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 43.0 | 3.06e-01 | 76.5% | 36.7% |
| 3240519 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 48.0 | 3.32e-01 | 94.1% | 64.8% |
| 5072892 | 601.28.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like | 0.56 | 40.0 | 3.92e-01 | 84.7% | 67.4% |
| 3246285 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.55 | 41.0 | 4.31e-01 | 78.8% | 100.0% |
| 5001407 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.54 | 38.0 | 2.67e-01 | 74.1% | 78.4% |
| 3346264 | 109.27.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain › NPH3 | 0.52 | 41.0 | 2.73e-01 | 85.9% | 23.4% |
| 3226634 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.51 | 47.0 | 4.36e-01 | 100.0% | 99.0% |
| 4432233 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.51 | 37.0 | 3.43e-01 | 77.6% | 73.6% |
| 3207027 | 3352.1.1.1 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3 | 0.51 | 43.0 | 2.80e-01 | 100.0% | 22.6% |
| 3593230 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.51 | 41.0 | 3.44e-01 | 85.9% | 87.1% |
| 4363239 | 2002.1.1.227 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fibrillarin_2 | 0.51 | 44.0 | 2.85e-01 | 100.0% | 82.7% |
| 3617250 | 109.27.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain | 0.51 | 44.0 | 4.36e-01 | 97.6% | 97.8% |
| 3373966 | 109.4.1.414 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MMS19_N | 0.50 | 45.0 | 2.99e-01 | 100.0% | 61.7% |