←Back to structures

IMGVR_UViG_3300029339_000390-3300029339-Ga0242823_100016621

Arc-Vir

IMGVR_UViG_3300029339_000390-3300029339-Ga0242823_100016621

Identity

Kingdom:
archaea

Quality

91.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-62
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04851.22 best ResIII 26.2 9.20e-06 86.0% 28.1%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3h1tA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.88 74.0 5.14e-01 100.0% 30.6%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.83 73.0 4.65e-01 94.7% 22.0%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.80 69.0 4.79e-01 100.0% 29.6%
4xxhA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.76 47.0 3.50e-01 73.7% 26.1%
8jx6B01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 63.0 4.30e-01 100.0% 27.5%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 4.84e-01 77.2% 91.8%
2ehgA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.65 48.0 3.64e-01 80.7% 41.6%
4u04A02 1.10.3290.10 Mainly Alpha › Orthogonal Bundle › Fic-like fold › Fido-like domain 0.63 51.0 3.57e-01 100.0% 72.1%
3lfuA02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.58 48.0 4.55e-01 100.0% 77.1%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 40.0 2.96e-01 77.2% 24.1%
2jrmA00 1.10.10.620 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ribosome modulation factor like domain 0.57 41.0 4.11e-01 80.7% 75.0%
4fp4A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 45.0 3.12e-01 96.5% 78.2%
3wfdC00 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.54 43.0 3.42e-01 96.5% 66.2%
2r8rA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.66e-01 73.7% 19.6%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.54 39.0 3.57e-01 80.7% 81.5%
4aybA07 1.10.132.30 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain 0.50 39.0 3.03e-01 82.5% 85.8%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.84 70.0 4.69e-01 94.7% 25.5%
4828712 4.8.1.30 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SNF2-rel_dom 0.81 74.0 6.88e-01 100.0% 82.9%
3674027 2004.1.1.135 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PIF1 0.76 65.0 5.38e-01 96.5% 54.0%
3723626 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.69 62.0 4.06e-01 100.0% 47.1%
4981400 5059.1.1.1 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.66 47.0 2.97e-01 75.4% 63.7%
3507297 109.4.1.839 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Maestro_HEAT 0.64 44.0 2.75e-01 71.9% 16.0%
4998860 1075.1.2.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX 0.64 51.0 3.28e-01 91.2% 55.6%
3666746 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 44.0 2.96e-01 78.9% 21.6%
3594976 604.4.1.2 ↗ alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › T4_Rnl2_C 0.61 52.0 4.21e-01 98.2% 74.8%
3704677 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 43.0 2.79e-01 82.5% 55.3%
3293469 101.1.1.121 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.56 43.0 4.33e-01 89.5% 100.0%
3706159 109.1.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C 0.55 42.0 3.20e-01 89.5% 98.8%
3412831 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.54 44.0 3.32e-01 91.2% 70.0%
4519029 2498.1.1.10 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 0.54 47.0 3.01e-01 100.0% 45.9%
3935293 109.27.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › BACK domain › BACK domain 0.53 44.0 4.07e-01 98.2% 97.5%
3200422 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 44.0 3.65e-01 93.0% 78.1%
3190824 166.1.1.0 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C 0.52 39.0 3.62e-01 82.5% 80.0%
4940379 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.51 43.0 3.52e-01 100.0% 91.3%
5032177 1079.1.1.8 ↗ alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE 0.50 41.0 2.91e-01 100.0% 57.1%