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IMGVR_UViG_3300029502_000021-3300029502-Ga0244223_10074549
Arc-VirIMGVR_UViG_3300029502_000021-3300029502-Ga0244223_10074549
Identity
- Kingdom:
- archaea
Quality
74.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-48
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.91 | 64.0 | 6.48e-01 | 72.9% | 74.5% |
| 4me2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.89 | 60.0 | 3.90e-01 | 70.8% | 17.5% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.88 | 61.0 | 5.51e-01 | 72.9% | 54.7% |
| 1yzmA00 | 4.10.860.20 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain | 0.88 | 66.0 | 6.74e-01 | 79.2% | 84.8% |
| 1o9gA02 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.87 | 62.0 | 6.54e-01 | 75.0% | 97.7% |
| 1yvwA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.86 | 64.0 | 5.07e-01 | 79.2% | 43.5% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.86 | 60.0 | 5.17e-01 | 75.0% | 49.3% |
| 3nymA00 | 6.10.290.10 | Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.84 | 61.0 | 4.41e-01 | 77.1% | 30.6% |
| 4u1cA01 | 4.10.860.10 | Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain | 0.83 | 64.0 | 6.24e-01 | 93.8% | 76.9% |
| 3bqoA00 | 1.25.40.210 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Telomere repeat-binding factor, dimerisation domain | 0.79 | 68.0 | 4.44e-01 | 100.0% | 22.8% |
| 2yxhA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.78 | 59.0 | 4.44e-01 | 81.2% | 43.4% |
| 4k51B00 | 1.25.40.860 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.78 | 63.0 | 4.27e-01 | 100.0% | 26.4% |
| 2gz6A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.77 | 68.0 | 4.00e-01 | 100.0% | 24.7% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.76 | 62.0 | 5.72e-01 | 100.0% | 69.8% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.76 | 65.0 | 5.62e-01 | 100.0% | 62.7% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.73 | 63.0 | 4.73e-01 | 100.0% | 47.9% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.71 | 61.0 | 4.99e-01 | 100.0% | 67.7% |
| 4ar9A02 | 1.10.390.20 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › | 0.70 | 57.0 | 4.09e-01 | 91.7% | 31.0% |
| 4k7bA00 | 1.20.120.1740 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sodium ion translocating NADH-quinone reductase subunit C-like | 0.59 | 47.0 | 3.78e-01 | 97.9% | 67.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3280308 | 192.11.1.0 ↗ | alpha bundles › Long alpha-hairpin › C-terminal UvrC-binding domain of UvrB › C-terminal UvrC-binding domain of UvrB | 0.94 | 64.0 | 7.38e-01 | 70.8% | 97.1% |
| 3406125 | 604.12.1.7 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1_C | 0.90 | 61.0 | 6.31e-01 | 70.8% | 75.6% |
| 3900350 | 7005.1.1.2 ↗ | a+b duplicates or obligate multimers › LUBAC-tethering domain › LUBAC-tethering domain › LUBAC-tethering domain › LTM | 0.89 | 60.0 | 6.25e-01 | 100.0% | 75.6% |
| 4942636 | 3390.1.1.0 ↗ | extended segments › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT › Photosystem II reaction center protein T, PsbT | 0.89 | 65.0 | 6.70e-01 | 77.1% | 82.2% |
| 4066875 | 7005.1.1.2 ↗ | a+b duplicates or obligate multimers › LUBAC-tethering domain › LUBAC-tethering domain › LUBAC-tethering domain › LTM | 0.89 | 60.0 | 5.95e-01 | 100.0% | 68.0% |
| 3732769 | 610.4.1.1 ↗ | alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY | 0.88 | 66.0 | 4.47e-01 | 79.2% | 25.2% |
| None | — | 0.87 | 64.0 | 3.96e-01 | 100.0% | 15.7% | |
| 3178367 | 7524.1.1.2 ↗ | a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh | 0.85 | 58.0 | 3.27e-01 | 100.0% | 7.7% |
| 3581005 | 109.4.1.1157 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_WDR11 | 0.84 | 57.0 | 3.44e-01 | 70.8% | 96.3% |
| 3482543 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.82 | 58.0 | 4.15e-01 | 97.9% | 27.7% |
| 3203178 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.82 | 67.0 | 5.23e-01 | 100.0% | 44.2% |
| 4410416 | 109.4.1.292 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › eIF3a_PCI_TPR-like | 0.81 | 73.0 | 4.66e-01 | 97.9% | 35.2% |
| 4170864 | 109.4.1.1919 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_6, TPR_16, YfiO | 0.81 | 60.0 | 3.76e-01 | 100.0% | 16.5% |
| 3640794 | 207.1.1.85 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like | 0.80 | 63.0 | 3.53e-01 | 100.0% | 7.2% |
| 3610948 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.77 | 68.0 | 4.93e-01 | 100.0% | 56.9% |
| 3735003 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.76 | 67.0 | 3.86e-01 | 100.0% | 96.2% |
| 3672159 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.76 | 64.0 | 4.32e-01 | 100.0% | 25.4% |
| 3257768 | 109.6.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF,RasGEF_N | 0.74 | 67.0 | 3.81e-01 | 97.9% | 11.1% |
| 3961953 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.74 | 61.0 | 4.40e-01 | 97.9% | 32.6% |
| 3722816 | 558.1.1.1 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain › LisH | 0.73 | 50.0 | 4.71e-01 | 97.9% | 58.3% |
| 4014760 | 558.1.1.0 ↗ | alpha duplicates or obligate multimers › Lis-homology dimerization domain › Lis-homology dimerization domain › Lis-homology dimerization domain | 0.72 | 52.0 | 5.00e-01 | 89.6% | 67.3% |
| 1885524 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.70 | 61.0 | 3.79e-01 | 100.0% | 18.8% |
| 3455536 | 109.4.1.1256 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3 | 0.68 | 61.0 | 4.24e-01 | 95.8% | 47.9% |
| 3381791 | 4070.1.1.0 ↗ | alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like | 0.66 | 59.0 | 3.59e-01 | 100.0% | 19.3% |
| 5032186 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.58 | 43.0 | 3.64e-01 | 77.1% | 96.0% |
| 3599638 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.55 | 47.0 | 2.99e-01 | 97.9% | 60.4% |