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IMGVR_UViG_3300029581_000043-3300029581-Ga0244848_100114622

Arc-Vir

IMGVR_UViG_3300029581_000043-3300029581-Ga0244848_100114622

Identity

Kingdom:
archaea

Quality

95.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-33
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1j78A05 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.82 66.0 5.52e-01 100.0% 51.7%
3i4uA01 1.20.120.1080 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.82 67.0 4.79e-01 100.0% 32.0%
1icrA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.80 64.0 3.91e-01 100.0% 15.7%
6ofuA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.78 60.0 3.62e-01 100.0% 12.0%
1dmhA00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.77 65.0 3.72e-01 100.0% 10.0%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.77 59.0 4.24e-01 100.0% 28.7%
7ce1A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.76 54.0 4.59e-01 80.6% 46.2%
2r18A02 1.10.8.880 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Birnavirus VP3 protein, domain 2 0.76 62.0 5.17e-01 100.0% 66.1%
1fcqA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.76 58.0 3.38e-01 100.0% 9.9%
3t38A01 1.10.8.1060 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Corynebacterium glutamicum thioredoxin-dependent arsenate reductase, N-terminal domain 0.75 57.0 4.59e-01 100.0% 40.8%
4myzC00 6.10.250.3430 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.75 52.0 4.42e-01 71.0% 43.1%
5e9hB01 1.10.10.850 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.72 56.0 3.94e-01 96.8% 28.3%
4mqvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 4.24e-01 83.9% 70.8%
2r7hB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.70 54.0 3.57e-01 100.0% 21.4%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.66 53.0 3.82e-01 96.8% 40.2%
2o4cA03 3.30.1370.170 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Erythronate-4-phosphate dehydrogenase, dimerisation domain 0.61 45.0 3.40e-01 93.5% 30.7%
1vq8I00 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.59 45.0 3.72e-01 100.0% 44.3%
1u2xA02 3.30.1110.20 Alpha Beta › 2-Layer Sandwich › Adenosine kinase, small domain › 0.58 51.0 3.43e-01 100.0% 84.9%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4466802 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.93 82.0 5.11e-01 100.0% 20.8%
3669095 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.92 71.0 6.60e-01 87.1% 67.5%
4404878 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.87 71.0 5.82e-01 96.8% 50.0%
3874383 7575.1.1.1 ↗ a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C14 0.85 70.0 4.37e-01 100.0% 17.7%
3929576 190.1.1.2 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › CHDNT 0.84 71.0 5.22e-01 100.0% 36.5%
362788 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.84 67.0 5.93e-01 93.5% 60.4%
3276794 2006.1.4.5 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › XRN_N 0.84 72.0 4.17e-01 100.0% 12.2%
4197043 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.83 64.0 4.20e-01 100.0% 20.8%
3802324 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.83 70.0 6.30e-01 100.0% 68.9%
4600309 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.82 67.0 4.77e-01 100.0% 31.0%
4192176 230.3.1.1 ↗ a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.77 61.0 4.10e-01 100.0% 22.1%
5065986 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.76 64.0 5.41e-01 100.0% 56.4%
3587609 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.75 55.0 4.72e-01 80.6% 50.0%
3292271 2007.1.2.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.74 60.0 3.54e-01 100.0% 13.2%
3681879 67.1.1.5 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ 0.71 60.0 4.28e-01 100.0% 32.6%
4997575 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.70 58.0 5.00e-01 100.0% 65.5%
4180031 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.67 53.0 4.82e-01 100.0% 62.0%
4161600 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.66 50.0 4.61e-01 100.0% 62.0%
2847559 7515.1.1.6 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Phosphodiest 0.64 53.0 3.27e-01 100.0% 68.2%