←Back to structures
IMGVR_UViG_3300029589_000028-3300029589-Ga0245106_1012563
Arc-VirIMGVR_UViG_3300029589_000028-3300029589-Ga0245106_1012563
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 26-80
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lrrA00 | 3.30.1370.50 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain | 0.67 | 53.0 | 4.94e-01 | 90.9% | 90.0% |
| 7snsB01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.65 | 47.0 | 3.36e-01 | 78.2% | 37.0% |
| 2km1A00 | 3.40.50.11000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Fe-S cluster assembly protein Dre2, N-terminal domain | 0.62 | 45.0 | 3.59e-01 | 80.0% | 39.3% |
| 7x4oB01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.57 | 33.0 | 2.60e-01 | 100.0% | 29.7% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 42.0 | 3.72e-01 | 81.8% | 79.8% |
| 2qlzA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 39.0 | 3.83e-01 | 78.2% | 88.9% |
| 1xmxA03 | 1.10.10.680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) | 0.55 | 45.0 | 3.98e-01 | 98.2% | 70.8% |
| 4nwbA02 | 3.90.105.20 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › Ribosomal protein L10, N-terminal fragment, domain II | 0.55 | 39.0 | 3.42e-01 | 76.4% | 64.0% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 41.0 | 3.46e-01 | 83.6% | 71.3% |
| 3to7A03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 3.88e-01 | 100.0% | 79.0% |
| 8ckpA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 40.0 | 2.61e-01 | 89.1% | 55.0% |
| 3clkA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 37.0 | 2.93e-01 | 81.8% | 57.1% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3176665 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.69 | 57.0 | 5.05e-01 | 92.7% | 80.0% |
| 3698585 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.65 | 48.0 | 4.29e-01 | 80.0% | 72.5% |
| 3679905 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.64 | 51.0 | 4.22e-01 | 96.4% | 66.1% |
| 3478525 | 320.1.1.7 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › PUS7L_N | 0.60 | 50.0 | 4.63e-01 | 98.2% | 94.7% |
| 4948082 | 3310.1.1.0 ↗ | a+b two layers › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) | 0.60 | 43.0 | 3.91e-01 | 76.4% | 57.3% |
| 4956448 | 3310.1.1.1 ↗ | a+b two layers › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › RL10P_insert | 0.60 | 42.0 | 3.87e-01 | 76.4% | 58.7% |
| 5057748 | 3310.1.1.1 ↗ | a+b two layers › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › Insertion domain in 60S ribosomal protein rpP0 (L10P) › RL10P_insert | 0.60 | 41.0 | 3.71e-01 | 74.5% | 53.8% |
| 5056548 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.59 | 47.0 | 3.84e-01 | 90.9% | 48.2% |
| 3733386 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 45.0 | 3.21e-01 | 89.1% | 41.1% |
| 3529864 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.58 | 45.0 | 4.36e-01 | 89.1% | 93.8% |
| 5068166 | 242.4.1.2 ↗ | a+b two layers › Homing endonucleases-like › DNA polymerase II large subunit DP2 central a+b domain › DNA polymerase II large subunit DP2 central a+b domain › PolC_DP2_central | 0.58 | 44.0 | 3.28e-01 | 85.5% | 33.5% |
| 3440680 | 170.2.1.13 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain › Retrotran_gag_2 | 0.58 | 44.0 | 3.72e-01 | 83.6% | 82.1% |
| 4027144 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 45.0 | 3.94e-01 | 96.4% | 67.4% |
| 5066286 | 328.6.1.1 ↗ | a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase | 0.53 | 44.0 | 3.09e-01 | 100.0% | 69.0% |
| 3604523 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.36e-01 | 98.2% | 61.7% |