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IMGVR_UViG_3300029589_000028-3300029589-Ga0245106_10125640

Arc-Vir

IMGVR_UViG_3300029589_000028-3300029589-Ga0245106_10125640

Quality

85.6 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-119
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xzmO02 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.66 33.0 4.22e-01 87.8% 81.4%
2wl8C00 1.20.120.900 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pex19, mPTS binding domain 0.59 42.0 4.30e-01 97.4% 77.1%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.58 40.0 4.49e-01 87.8% 95.3%
2k3qA00 1.10.274.70 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain 0.57 40.0 3.98e-01 88.7% 69.5%
7qocA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 39.0 3.36e-01 70.4% 93.0%
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 40.0 4.32e-01 100.0% 87.6%
3r2kA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 41.0 3.78e-01 78.3% 76.0%
6ncvA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 34.0 3.76e-01 100.0% 76.9%
3n00A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 42.0 3.63e-01 80.9% 91.8%
5domA00 1.10.110.10 Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins 0.53 36.0 3.94e-01 94.8% 87.8%
2janA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.52 37.0 3.91e-01 72.2% 100.0%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.52 44.0 4.20e-01 100.0% 78.3%
1lkoA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.52 40.0 3.71e-01 80.9% 80.0%
2or0B01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.52 38.0 3.72e-01 76.5% 71.0%
3cueB00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.51 41.0 3.62e-01 85.2% 86.2%
3i1aA03 1.20.58.840 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 33.0 3.36e-01 86.1% 66.4%
2sasA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 44.0 3.82e-01 98.3% 78.4%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3989823 186.1.1.1 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.78 69.0 6.25e-01 93.9% 84.0%
4965639 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.78 67.0 7.00e-01 97.4% 100.0%
4009383 186.1.1.3 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 0.77 71.0 7.15e-01 99.1% 97.4%
5010451 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.73 61.0 6.24e-01 96.5% 91.8%
4998700 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.70 63.0 6.16e-01 100.0% 92.0%
4962165 186.1.1.30 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › PF30198 0.68 61.0 6.01e-01 100.0% 91.2%
4999494 186.1.1.3 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 0.68 62.0 5.96e-01 100.0% 92.3%
4342098 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 44.0 4.76e-01 87.8% 81.1%
5000182 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 42.0 4.33e-01 98.3% 77.1%
3790887 174.1.1.32 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Transmemb_17 0.56 47.0 4.35e-01 100.0% 71.7%
4452933 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.55 36.0 3.04e-01 81.7% 41.1%
3239318 601.33.1.19 alpha bundles › Four-helical up-and-down bundle › CHAD domain › CHAD domain › Transmemb_17 0.54 45.0 4.40e-01 100.0% 80.0%
3410814 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 41.0 4.04e-01 100.0% 74.4%
3247352 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.54 41.0 4.04e-01 90.4% 74.4%
3527769 109.25.1.1 alpha superhelices › Repetitive alpha hairpins › GPCR-autoproteolysis inducing domain subdomain A › GPCR-autoproteolysis inducing domain subdomain A › GAIN 0.53 34.0 3.45e-01 76.5% 63.5%
3166340 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.52 43.0 4.07e-01 100.0% 76.4%
3996811 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.50 35.0 3.19e-01 73.9% 58.2%
D2 high residues 133-313
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 47.9 1.80e-12 100.0% 92.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a8eA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.86 68.0 6.91e-01 95.0% 82.1%
5jk0B01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.83 74.0 7.64e-01 100.0% 97.7%
1aihA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.79 61.0 6.30e-01 100.0% 83.5%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 72.0 6.82e-01 100.0% 92.9%
3nkhA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 72.0 6.65e-01 100.0% 87.3%
1f44A01 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.76 71.0 6.98e-01 100.0% 92.3%
3uxuA00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.75 52.0 5.54e-01 95.6% 79.2%
2v6eA03 1.10.443.30 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Telomere resolvase 0.69 64.0 5.97e-01 100.0% 85.3%
1floC02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.67 60.0 5.34e-01 96.7% 68.9%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.63 32.0 4.14e-01 89.0% 85.1%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 28.0 3.57e-01 82.3% 84.5%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 29.0 3.42e-01 71.3% 80.9%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4338286 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 59.0 6.88e-01 79.0% 91.1%
5059725 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.88 73.0 7.42e-01 100.0% 86.7%
3969558 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.87 59.0 6.80e-01 79.0% 91.1%
4183457 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 66.0 7.39e-01 98.3% 97.9%
4637388 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 68.0 7.03e-01 100.0% 85.9%
4153666 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 59.0 6.78e-01 79.0% 92.6%
4120466 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 59.0 6.76e-01 79.0% 92.6%
3964552 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.86 59.0 6.78e-01 79.0% 93.3%
4994277 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 72.0 7.28e-01 100.0% 87.8%
4095013 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 60.0 6.93e-01 79.6% 95.6%
4960057 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 59.0 6.66e-01 77.9% 90.0%
4181053 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 78.0 7.52e-01 100.0% 86.5%
4959043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 59.0 6.99e-01 77.9% 99.2%
5076857 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.85 70.0 7.13e-01 100.0% 88.0%
4261355 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 59.0 6.72e-01 77.3% 92.1%
3958910 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.84 59.0 6.74e-01 79.0% 92.9%
4964228 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 53.0 6.10e-01 77.9% 84.4%
5037644 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.84 51.0 6.23e-01 78.5% 91.7%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 75.0 7.23e-01 100.0% 84.5%
5083506 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 73.0 7.30e-01 100.0% 89.2%
4192665 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 54.0 6.53e-01 78.5% 97.5%
4042318 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 57.0 6.61e-01 77.9% 93.3%
4954764 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.83 46.0 6.06e-01 78.5% 95.2%
4278298 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 56.0 6.46e-01 80.7% 92.6%
5032561 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.82 47.0 6.04e-01 76.8% 96.2%
5027341 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 65.0 6.88e-01 97.2% 92.5%
5028332 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 52.0 6.25e-01 79.0% 93.6%
4992939 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 63.0 6.48e-01 95.6% 84.1%
4475168 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 71.0 6.96e-01 100.0% 85.1%
4004483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 72.0 7.06e-01 100.0% 87.9%
3943153 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 54.0 6.33e-01 77.9% 93.8%
5029991 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 51.0 6.14e-01 79.0% 92.0%
4980638 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 63.0 6.92e-01 85.1% 96.7%
4380833 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.81 64.0 6.75e-01 100.0% 90.3%
5052541 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 53.0 6.34e-01 79.6% 96.8%
4034370 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 52.0 6.33e-01 79.0% 99.2%
4112553 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 57.0 6.37e-01 79.0% 91.0%
3964171 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 66.0 6.75e-01 100.0% 89.1%
4969226 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 57.0 6.60e-01 80.1% 97.8%
4965845 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 73.0 7.22e-01 100.0% 91.6%
4936284 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 49.0 6.02e-01 79.0% 95.7%
4999495 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.80 66.0 6.65e-01 97.2% 86.1%
4966027 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 67.0 6.73e-01 100.0% 86.4%
4975762 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 51.0 6.09e-01 78.5% 93.6%
3839627 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 56.0 6.38e-01 80.7% 95.6%
5030307 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 52.0 6.18e-01 79.6% 95.2%
4053930 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 61.0 6.66e-01 79.0% 98.0%
5008464 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.79 67.0 6.67e-01 100.0% 86.5%
4082783 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.78 60.0 6.41e-01 79.6% 88.7%
5016957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 70.0 7.18e-01 100.0% 98.9%
3839222 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 6.21e-01 79.6% 93.6%
5016981 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 49.0 5.91e-01 79.6% 95.0%
5035582 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 48.0 5.90e-01 79.0% 97.4%
4313957 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 55.0 6.34e-01 79.0% 98.5%
4413773 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.77 51.0 5.78e-01 79.6% 88.9%
3271483 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 72.0 7.09e-01 100.0% 95.8%
3587645 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 55.0 6.43e-01 80.1% 99.3%
4007744 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 73.0 6.94e-01 100.0% 91.7%
4210863 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 49.0 5.73e-01 79.0% 90.0%
4965169 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.76 72.0 6.80e-01 100.0% 94.3%
4028841 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.76 51.0 5.93e-01 77.9% 92.6%
4928138 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.75 70.0 6.76e-01 98.9% 97.0%
3979114 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 52.0 6.04e-01 84.0% 98.5%
3588206 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.75 56.0 6.09e-01 79.6% 92.0%
3588110 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.74 55.0 6.16e-01 78.5% 97.1%
3926774 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.74 55.0 6.20e-01 77.3% 98.6%
5058518 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 63.0 6.18e-01 96.7% 83.6%
3289618 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 56.0 6.05e-01 79.0% 98.1%
3964657 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.73 65.0 6.34e-01 100.0% 87.2%
4928148 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.73 60.0 6.27e-01 100.0% 92.3%
3587374 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 56.0 5.84e-01 79.6% 96.4%
4931987 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 44.0 5.58e-01 77.9% 99.1%
5083074 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 54.0 5.91e-01 79.0% 92.7%
5011490 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.72 54.0 5.91e-01 79.6% 92.0%
4962932 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.71 54.0 5.72e-01 79.0% 97.0%
4962166 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 61.0 6.06e-01 91.2% 91.4%
5033298 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.69 53.0 5.75e-01 79.6% 97.4%