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IMGVR_UViG_3300029595_000020-3300029595-Ga0245140_10115621
Arc-VirIMGVR_UViG_3300029595_000020-3300029595-Ga0245140_10115621
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-85
Domain cluster:
representative
D2
high
residues 100-282
Domain cluster:
rep: IMGVR_UViG_3300010237_000006-3300010237-Ga0136250_1000002017__D103-269
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17289.9 best | Terminase_6C | 35.0 | 1.90e-08 | 84.7% | 97.4% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.70 | 66.0 | 6.59e-01 | 100.0% | 99.5% |
| 1kcfB00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.69 | 58.0 | 5.39e-01 | 88.0% | 79.8% |
| 3c6aA00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.68 | 63.0 | 6.18e-01 | 100.0% | 90.9% |
| 2fcjB00 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.60 | 35.0 | 4.24e-01 | 92.3% | 88.1% |
| 2zixB02 | 4.10.800.30 | Few Secondary Structures › Irregular › Invariant Chain; Chain I › ERCC4, Mus81-Eme1 complex, nuclease domain, subdomain 2 | 0.59 | 29.0 | 3.93e-01 | 88.0% | 92.3% |
| 1yvuA04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 45.0 | 4.25e-01 | 84.7% | 99.1% |
| 1dk7A00 | 3.50.7.10 | Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL | 0.53 | 34.0 | 3.78e-01 | 87.4% | 80.1% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 34.0 | 3.88e-01 | 88.0% | 88.7% |
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.52 | 37.0 | 3.03e-01 | 72.7% | 68.6% |
| 3lteD00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 34.0 | 4.02e-01 | 86.9% | 97.6% |
| 4ur7A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 41.0 | 3.49e-01 | 83.6% | 87.8% |
| 4ldaB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 32.0 | 3.81e-01 | 86.3% | 90.6% |
| 2ziuB01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 34.0 | 3.68e-01 | 100.0% | 79.9% |
| 1fdyB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.51 | 40.0 | 3.45e-01 | 82.5% | 90.0% |
| 4nicA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 31.0 | 3.83e-01 | 85.8% | 96.6% |
| 4do7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 37.0 | 3.21e-01 | 74.9% | 79.2% |
| 1a2oA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 35.0 | 3.95e-01 | 92.9% | 95.5% |
| 2khzA00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 36.0 | 3.75e-01 | 72.1% | 95.1% |
| 4ymhD00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.50 | 38.0 | 3.54e-01 | 78.7% | 84.6% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954544 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.97 | 95.0 | 9.35e-01 | 100.0% | 96.3% |
| 4974990 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.86 | 76.0 | 7.84e-01 | 100.0% | 96.6% |
| 3964372 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.84 | 77.0 | 7.49e-01 | 100.0% | 89.2% |
| 4972935 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 74.0 | 7.48e-01 | 100.0% | 95.6% |
| 5002634 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.81 | 76.0 | 7.66e-01 | 100.0% | 98.9% |
| 4975080 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.81 | 73.0 | 7.32e-01 | 100.0% | 93.0% |
| 3944867 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.79 | 75.0 | 7.09e-01 | 100.0% | 97.2% |
| 2877581 | 2484.1.1.95 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase-T7_RNaseH-like | 0.78 | 73.0 | 6.44e-01 | 100.0% | 88.1% |
| 5080207 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.76 | 72.0 | 6.97e-01 | 100.0% | 98.0% |
| 3946809 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.75 | 71.0 | 6.78e-01 | 100.0% | 95.1% |
| 4256383 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.74 | 51.0 | 5.56e-01 | 90.7% | 84.7% |
| 5031052 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 69.0 | 6.67e-01 | 100.0% | 97.1% |
| 5031041 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.72 | 69.0 | 6.75e-01 | 100.0% | 93.8% |
| 3222918 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 50.0 | 5.42e-01 | 89.1% | 85.3% |
| 3166064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.70 | 66.0 | 6.16e-01 | 100.0% | 98.6% |
| 4122754 | 2484.1.1.48 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II | 0.69 | 51.0 | 5.40e-01 | 90.7% | 85.6% |
| 3689537 | 2484.1.1.90 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DEDDh_C | 0.58 | 49.0 | 4.75e-01 | 89.6% | 92.2% |
| 5058048 | 2005.1.1.11 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 | 0.58 | 30.0 | 3.42e-01 | 81.4% | 63.6% |
| 4622340 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.58 | 34.0 | 3.88e-01 | 86.3% | 77.7% |
| 5034218 | 2005.1.1.20 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ThiI | 0.57 | 41.0 | 4.69e-01 | 83.6% | 99.3% |
| 3038269 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.56 | 41.0 | 3.56e-01 | 74.9% | 89.6% |
| 3925388 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.56 | 25.0 | 3.45e-01 | 90.7% | 83.1% |
| 11164 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.55 | 45.0 | 4.25e-01 | 85.2% | 98.6% |
| 3915450 | 2007.1.2.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I | 0.55 | 30.0 | 3.80e-01 | 78.1% | 90.5% |
| 3589031 | 2484.1.1.101 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS240 | 0.54 | 39.0 | 4.02e-01 | 84.2% | 76.0% |
| 5070693 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.53 | 40.0 | 4.17e-01 | 78.1% | 100.0% |
| 5026406 | 2484.1.1.22 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF99 | 0.52 | 40.0 | 4.12e-01 | 80.3% | 99.4% |
| 4958656 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.51 | 43.0 | 3.63e-01 | 87.4% | 77.3% |
| 5059868 | 7512.1.1.3 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 | 0.51 | 36.0 | 3.72e-01 | 92.3% | 74.3% |
| 4959188 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.51 | 42.0 | 4.15e-01 | 87.4% | 94.0% |
| 5017867 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.51 | 42.0 | 4.41e-01 | 88.0% | 100.0% |
| 4643206 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.50 | 42.0 | 4.22e-01 | 87.4% | 88.3% |
| 3271258 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.50 | 42.0 | 3.97e-01 | 88.5% | 84.1% |
| 3590178 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.50 | 42.0 | 3.59e-01 | 88.0% | 79.7% |