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IMGVR_UViG_3300029708_000319-3300029708-Ga0245189_100060143
Arc-VirIMGVR_UViG_3300029708_000319-3300029708-Ga0245189_100060143
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-128
Domain cluster:
rep: IMGVR_UViG_638154508_000001-638154508-638178667__D20-139
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05598.17 best | DUF772 | 26.6 | 9.50e-06 | 80.4% | 69.4% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2cmpA00 | 1.10.10.1400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Terminase, small subunit, N-terminal DNA-binding domain, HTH motif | 0.63 | 35.0 | 4.40e-01 | 74.5% | 98.2% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 31.0 | 3.57e-01 | 79.4% | 66.7% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 31.0 | 3.61e-01 | 78.4% | 69.0% |
| 1e9rA02 | 1.10.8.80 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Magnesium chelatase subunit I, C-Terminal domain | 0.56 | 47.0 | 4.57e-01 | 94.1% | 97.3% |
| 4q2cA01 | 1.10.3210.30 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › | 0.54 | 48.0 | 3.60e-01 | 100.0% | 64.6% |
| 6fucA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 42.0 | 3.53e-01 | 85.3% | 88.0% |
| 2pmrA00 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.53 | 27.0 | 3.03e-01 | 95.1% | 60.5% |
| 2g5cB02 | 1.10.3660.10 | Mainly Alpha › Orthogonal Bundle › 6-phosphogluconate dehydrogenase C-terminal fold › 6-phosphogluconate dehydrogenase C-terminal like domain | 0.53 | 39.0 | 3.89e-01 | 83.3% | 74.5% |
| 4ki9A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.52 | 40.0 | 3.53e-01 | 84.3% | 86.6% |
| 1ylmA00 | 1.20.120.580 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like | 0.51 | 41.0 | 3.66e-01 | 100.0% | 61.3% |
| 2l4mA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 33.0 | 3.81e-01 | 75.5% | 98.6% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4954372 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.98 | 82.0 | 5.63e-01 | 100.0% | 30.5% |
| 5019256 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.90 | 73.0 | 7.67e-01 | 84.3% | 91.4% |
| 4034131 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.90 | 85.0 | 8.41e-01 | 98.0% | 96.2% |
| 3970986 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.89 | 85.0 | 5.77e-01 | 100.0% | 33.1% |
| 5070929 | 2484.1.1.332 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 | 0.89 | 85.0 | 5.81e-01 | 100.0% | 33.4% |
| 5020443 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.89 | 83.0 | 5.75e-01 | 100.0% | 34.2% |
| 4933370 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.84 | 67.0 | 7.14e-01 | 83.3% | 98.9% |
| 5026084 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.82 | 69.0 | 7.17e-01 | 99.0% | 95.8% |
| 3949232 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 75.0 | 4.95e-01 | 100.0% | 28.8% |
| 3587330 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.80 | 74.0 | 4.85e-01 | 100.0% | 26.9% |
| 5035003 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.79 | 69.0 | 6.88e-01 | 95.1% | 97.1% |
| 3954386 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.79 | 72.0 | 6.96e-01 | 100.0% | 93.0% |
| 5005232 | 2484.1.1.332 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF772 | 0.78 | 71.0 | 5.06e-01 | 100.0% | 36.3% |
| 4125245 | 101.1.2.813 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF772 | 0.77 | 69.0 | 6.81e-01 | 100.0% | 99.1% |
| 4514424 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.76 | 69.0 | 4.85e-01 | 100.0% | 33.2% |
| 3965831 | 101.1.3.17 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › DUF772 | 0.75 | 66.0 | 6.27e-01 | 95.1% | 95.0% |
| 4943072 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.75 | 69.0 | 6.72e-01 | 100.0% | 95.5% |
| 3964125 | 101.1.1.248 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DUF772 | 0.74 | 68.0 | 6.37e-01 | 100.0% | 98.4% |
| 4932085 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 50.0 | 5.72e-01 | 72.5% | 97.3% |
| 3189766 | 101.1.1.3 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding | 0.65 | 51.0 | 4.59e-01 | 84.3% | 67.1% |
| 3308030 | 101.1.1.48 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › SLIDE | 0.63 | 52.0 | 4.75e-01 | 95.1% | 68.1% |
| 3209237 | 102.2.1.0 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH | 0.56 | 39.0 | 3.45e-01 | 72.5% | 76.0% |
| 3173689 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.50 | 35.0 | 3.62e-01 | 93.1% | 77.9% |
| 5050625 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.50 | 34.0 | 3.04e-01 | 81.4% | 47.1% |
D2
high
residues 136-186